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    D3Ertd751e DNA segment, Chr 3, ERATO Doi 751, expressed [ Mus musculus (house mouse) ]

    Gene ID: 73852, updated on 27-Nov-2024

    Summary

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    Official Symbol
    D3Ertd751eprovided by MGI
    Official Full Name
    DNA segment, Chr 3, ERATO Doi 751, expressedprovided by MGI
    Primary source
    MGI:MGI:1289213
    See related
    Ensembl:ENSMUSG00000025766 AllianceGenome:MGI:1289213
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2810009O15Rik; 4930415G15Rik
    Summary
    Orthologous to human C4orf33 (chromosome 4 open reading frame 33). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in bladder adult (RPKM 1.9), CNS E11.5 (RPKM 1.8) and 25 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See D3Ertd751e in Genome Data Viewer
    Location:
    3 B; 3 19.96 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (41697031..41757930)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (41742606..41803307)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118568628 Neighboring gene STARR-seq mESC enhancer starr_07506 Neighboring gene jade family PHD finger 1 Neighboring gene STARR-seq mESC enhancer starr_07507 Neighboring gene STARR-seq mESC enhancer starr_07508 Neighboring gene STARR-seq mESC enhancer starr_07509 Neighboring gene STARR-positive B cell enhancer mm9_chr3:41546357-41546658 Neighboring gene sodium channel and clathrin linker 1 Neighboring gene STARR-seq mESC enhancer starr_07510 Neighboring gene STARR-seq mESC enhancer starr_07511 Neighboring gene heat shock protein 8 pseudogene Neighboring gene STARR-seq mESC enhancer starr_07512 Neighboring gene STARR-seq mESC enhancer starr_07513 Neighboring gene STARR-seq mESC enhancer starr_07515 Neighboring gene predicted gene, 54208

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    2. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    UPF0462 protein C4orf33 homolog

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001099785.1 → NP_001093255.1  UPF0462 protein C4orf33 homolog isoform a

      See identical proteins and their annotated locations for NP_001093255.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate 5' non-coding exon, compared to variant 1. Both variants 1 and 2 encode the same isoform (a).
      Source sequence(s)
      AK085404, AK138405
      Consensus CDS
      CCDS17332.1
      UniProtKB/Swiss-Prot
      Q8BGN2, Q8C8S9, Q9CZE4, Q9D5M7
      Related
      ENSMUSP00000103700.3, ENSMUST00000108065.9
      Conserved Domains (1) summary
      cl14783
      Location:49 → 171
      DOMON_like; Domon-like ligand-binding domains

    2. NM_001291048.1 → NP_001277977.1  UPF0462 protein C4orf33 homolog isoform c

      See identical proteins and their annotated locations for NP_001277977.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in both UTRs, lacks two in-frame exons and uses an alternate splice site in the coding region which results in a frameshift compared to variant 1. The encoded isoform (c) is shorter and has a distinct C-terminus, compared to isoform a.
      Source sequence(s)
      AC102795, AK012700
      Consensus CDS
      CCDS71239.1
      UniProtKB/TrEMBL
      A0A0R4J1L5
      Related
      ENSMUSP00000112558.2, ENSMUST00000119572.8

    3. NM_027271.1 → NP_081547.1  UPF0462 protein C4orf33 homolog isoform b

      See identical proteins and their annotated locations for NP_081547.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks two alternate in-frame exons in the 3' coding region, compared to variant 1. The resulting protein (isoform b) is shorter than isoform a.
      Source sequence(s)
      AK138405, BC062244
      Consensus CDS
      CCDS50900.1
      UniProtKB/Swiss-Prot
      Q8BGN2
      Related
      ENSMUSP00000142092.2, ENSMUST00000192193.6

    4. NM_028667.3 → NP_082943.2  UPF0462 protein C4orf33 homolog isoform a

      See identical proteins and their annotated locations for NP_082943.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Both variants 1 and 2 encode the same isoform.
      Source sequence(s)
      AK015146, AK138405
      Consensus CDS
      CCDS17332.1
      UniProtKB/Swiss-Prot
      Q8BGN2, Q8C8S9, Q9CZE4, Q9D5M7
      Related
      ENSMUSP00000119049.2, ENSMUST00000146165.8
      Conserved Domains (1) summary
      cl14783
      Location:49 → 171
      DOMON_like; Domon-like ligand-binding domains

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      41697031..41757930
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036163355.1 → XP_036019248.1  UPF0462 protein C4orf33 homolog isoform X4

    2. XM_036163354.1 → XP_036019247.1  UPF0462 protein C4orf33 homolog isoform X1

      Conserved Domains (1) summary
      cl14783
      Location:49 → 171
      DOMON_like; Domon-like ligand-binding domains

    3. XM_011239973.3 → XP_011238275.1  UPF0462 protein C4orf33 homolog isoform X3

      See identical proteins and their annotated locations for XP_011238275.1

      Conserved Domains (1) summary
      cl14783
      Location:49 → 171
      DOMON_like; Domon-like ligand-binding domains

    4. XM_030252844.2 → XP_030108704.1  UPF0462 protein C4orf33 homolog isoform X6

    5. XM_011239972.3 → XP_011238274.1  UPF0462 protein C4orf33 homolog isoform X2

      Conserved Domains (1) summary
      cl14783
      Location:49 → 171
      DOMON_like; Domon-like ligand-binding domains

    6. XM_036163356.1 → XP_036019249.1  UPF0462 protein C4orf33 homolog isoform X5

      Conserved Domains (1) summary
      cl14783
      Location:49 → 171
      DOMON_like; Domon-like ligand-binding domains

    7. XM_036163358.1 → XP_036019251.1  UPF0462 protein C4orf33 homolog isoform X7

      UniProtKB/TrEMBL
      A0A0R4J1L5

    8. XM_036163357.1 → XP_036019250.1  UPF0462 protein C4orf33 homolog isoform X5

      Conserved Domains (1) summary
      cl14783
      Location:49 → 171
      DOMON_like; Domon-like ligand-binding domains

    RNA

    1. XR_867177.3 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BGN2.1 GenPept UniProtKB/Swiss-Prot:Q8BGN2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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