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    Spmap1 sperm microtubule associated protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 72215, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Spmap1provided by MGI
    Official Full Name
    sperm microtubule associated protein 1provided by MGI
    Primary source
    MGI:MGI:1919465
    See related
    Ensembl:ENSMUSG00000018543 AllianceGenome:MGI:1919465
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700001P01Rik
    Summary
    Orthologous to human SPMAP1 (sperm microtubule associated protein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 57.6) See more
    Orthologs
    human all
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    Genomic context

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    See Spmap1 in Genome Data Viewer
    Location:
    11 D; 11 61.1 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (97662307..97666744, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (97771481..97775918, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene ATP synthase, H+ transporting, mitochondrial FO complex, subunit G2, pseudogene Neighboring gene nuclear encoded tRNA cysteine 18 (anticodon GCA) Neighboring gene ribosomal protein L23 Neighboring gene STARR-positive B cell enhancer ABC_E5272 Neighboring gene small nucleolar RNA, H/ACA box 21 Neighboring gene STARR-seq mESC enhancer starr_30635 Neighboring gene nuclear encoded tRNA cysteine 56 (anticodon GCA)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    sperm microtubule associated protein 1
    Names
    uncharacterized protein C17orf98 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028156.3 → NP_082432.2  sperm microtubule associated protein 1

      See identical proteins and their annotated locations for NP_082432.2

      Status: VALIDATED

      Source sequence(s)
      AL596446
      Consensus CDS
      CCDS36297.1
      UniProtKB/Swiss-Prot
      Q80ZQ1, Q9DAQ5
      Related
      ENSMUSP00000103202.2, ENSMUST00000107576.2
      Conserved Domains (1) summary
      pfam15075
      Location:12 → 144
      DUF4542; Domain of unknown function (DUF4542)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      97662307..97666744 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9DAQ5.1 GenPept UniProtKB/Swiss-Prot:Q9DAQ5

    Gene LinkOut

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