BSH transcription regulatory protein SNF5, putative (BSH) [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: BSH
Official Full Name: transcription regulatory protein SNF5, putative (BSH)
Primary source: TAIR:AT3G17590
Locus tag: AT3G17590
See related: Araport:AT3G17590
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: BUSHY; BUSHY GROWTH; CHE1
Summary: Encodes the Arabidopsis homologue of yeast SNF5 and represents a conserved subunit of plant SWI/SNF complexes.
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Genomic context

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See BSH in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 10

Sequence:: Chromosome: 3; NC_003074.8 (6017166..6019724, complement)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001202989.1

Supported by ESTs:

NM_112639.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables chromatin binding	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in chromatin remodeling	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within chromatin remodeling	ISS Inferred from Sequence or Structural Similarity more info	PubMed

Component	Evidence Code	Pubs
located_in nuclear chromosome	IEA Inferred from Electronic Annotation more info
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: transcription regulatory protein SNF5, putative (BSH)

NP_001189918.1

BUSHY GROWTH (BSH); CONTAINS InterPro DOMAIN/s: SNF5/SMARCB1/INI1 (InterPro:IPR006939).

NP_566581.1

BUSHY GROWTH (BSH); CONTAINS InterPro DOMAIN/s: SNF5/SMARCB1/INI1 (InterPro:IPR006939); Has 591 Blast hits to 429 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 266; Fungi - 262; Plants - 37; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

6017166..6019724 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001338294.1 → NP_001326663.1 transcription regulatory protein SNF5, putative (BSH) [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178V9V6, A0A1I9LPZ2
NM_112639.4 → NP_566581.1 transcription regulatory protein SNF5, putative (BSH) [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

P93045, Q9LUN8

UniProtKB/TrEMBL

A0A178V9V6, Q2HIG1

Conserved Domains (1) summary

pfam04855
Location:21 → 157

SNF5; SNF5 / SMARCB1 / INI1
NM_001202989.1 → NP_001189918.1 transcription regulatory protein SNF5, putative (BSH) [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178V9V6, A0A5S9XD22, F4J581

Conserved Domains (1) summary

pfam04855
Location:23 → 159

SNF5; SNF5 / SMARCB1 / INI1