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    LINC02619 long intergenic non-protein coding RNA 2619 [ Homo sapiens (human) ]

    Gene ID: 105377245, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC02619provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2619provided by HGNC
    Primary source
    HGNC:HGNC:54094
    See related
    Ensembl:ENSG00000249382 AllianceGenome:HGNC:54094
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 4.0) See more
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    Genomic context

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    See LINC02619 in Genome Data Viewer
    Location:
    4q13.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (58987187..58988154, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (62436997..62437964, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (59852905..59853872, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377672 Neighboring gene uncharacterized LOC105377246 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:59925530-59926052 Neighboring gene long intergenic non-protein coding RNA 2429 Neighboring gene NANOG hESC enhancer GRCh37_chr4:60024914-60025415 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:60384297-60384518 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:60721283-60721784 Neighboring gene RNA, U6 small nuclear 1325, pseudogene Neighboring gene Sharpr-MPRA regulatory region 1726 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:61288221-61288721 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:61348812-61349396 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:61589695-61590894 Neighboring gene protein phosphatase 2 regulatory subunit Bgamma pseudogene Neighboring gene long intergenic non-protein coding RNA 2496

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_133939.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AI208617, BQ429854, BX095557
      Related
      ENST00000512911.3

    2. NR_133940.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AI208617, BQ429854, BX095557
      Related
      ENST00000514707.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      58987187..58988154 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_021159995.1 Reference GRCh38.p14 PATCHES

      Range
      180263..275322 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007069129.1 RNA Sequence

    2. XR_007069130.1 RNA Sequence

    3. XR_007069128.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      62436997..62437964 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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