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    1700112J05Rik RIKEN cDNA 1700112J05 gene [ Mus musculus (house mouse) ]

    Gene ID: 68246, updated on 22-Oct-2024

    Summary

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    Official Symbol
    1700112J05Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700112J05 geneprovided by MGI
    Primary source
    MGI:MGI:3696786
    See related
    Ensembl:ENSMUSG00000086632 AllianceGenome:MGI:3696786
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700110A09Rik
    Expression
    Restricted expression toward testis adult (RPKM 19.9) See more
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    Genomic context

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    See 1700112J05Rik in Genome Data Viewer
    Location:
    5 C3.3; 5 41.45 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (77154289..77166710, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (77006442..77018863, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase Neighboring gene predicted gene, 54291 Neighboring gene signal recognition particle 72 Neighboring gene ADP-ribosylation factor-like 9 Neighboring gene sperm microtubule associated protein 2 like Neighboring gene STARR-seq mESC enhancer starr_13457 Neighboring gene microRNA 12199 Neighboring gene predicted gene, 57746 Neighboring gene HOP homeobox

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Linkage Interrelations of Three Genes for Rex (Short) Coat in the Rabbit. Castle WE, et al. Proc Natl Acad Sci U S A, 1933 Dec. PMID 16587815, Free PMC Article
    2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • AC114666.6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_077218.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK018948, AV206224
      Related
      ENSMUST00000129353.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      77154289..77166710 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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