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    Rpl36 ribosomal protein L36 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 58927, updated on 27-Nov-2024

    Summary

    Official Symbol
    Rpl36provided by RGD
    Official Full Name
    ribosomal protein L36provided by RGD
    Primary source
    RGD:62085
    See related
    EnsemblRapid:ENSRNOG00000079694 AllianceGenome:RGD:62085
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Part of cytosolic large ribosomal subunit. Orthologous to human RPL36 (ribosomal protein L36). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Thymus (RPKM 3579.3), Spleen (RPKM 3167.0) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Rpl36 in Genome Data Viewer
    Location:
    9q11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (1529117..1534534)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (1441986..1447397)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (10441228..10441981, complement)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene scaffold attachment factor B Neighboring gene mitochondrial contact site and cristae organizing system subunit 13 Neighboring gene lon peptidase 1, mitochondrial Neighboring gene cation channel sperm associated auxiliary subunit delta Neighboring gene RAN binding protein 3 Neighboring gene calcyphosine

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables structural constituent of ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    involved_in cytoplasmic translation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in cytoplasmic translation ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of cytosolic large ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of cytosolic large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosolic ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in synapse ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    large ribosomal subunit protein eL36
    Names
    60S ribosomal protein L36

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_022504.1NP_071949.1  large ribosomal subunit protein eL36

      See identical proteins and their annotated locations for NP_071949.1

      Status: PROVISIONAL

      Source sequence(s)
      X68284
      UniProtKB/Swiss-Prot
      P39032, Q6PDV5
      UniProtKB/TrEMBL
      A0A0G2K6X1
      Related
      ENSRNOP00000109779.1, ENSRNOT00000139964.1
      Conserved Domains (1) summary
      pfam01158
      Location:494
      Ribosomal_L36e; Ribosomal protein L36e

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      1529117..1534534
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039084146.2XP_038940074.1  large ribosomal subunit protein eL36 isoform X1

      UniProtKB/TrEMBL
      A0A0G2K6X1, A6KQW5
      Conserved Domains (1) summary
      pfam01158
      Location:494
      Ribosomal_L36e; Ribosomal protein L36e