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    Mrpl23 mitochondrial ribosomal protein L23 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 64360, updated on 3-Dec-2024

    Summary

    Official Symbol
    Mrpl23provided by RGD
    Official Full Name
    mitochondrial ribosomal protein L23provided by RGD
    Primary source
    RGD:68343
    See related
    EnsemblRapid:ENSRNOG00000020354 AllianceGenome:RGD:68343
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Rpl23l; rL23MRP; Rpl23-rs
    Summary
    Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Predicted to be located in fibrillar center and mitochondrial ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL23 (mitochondrial ribosomal protein L23). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Muscle (RPKM 346.2), Heart (RPKM 334.1) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Mrpl23 in Genome Data Viewer
    Location:
    1q41
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (207116930..207124702)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (197687452..197695222)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (215701544..215709313)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene lymphocyte-specific protein 1 Neighboring gene proline rich 33 Neighboring gene troponin T3, fast skeletal type Neighboring gene uncharacterized LOC102548505 Neighboring gene microRNA 675 Neighboring gene H19 imprinted maternally expressed transcript Neighboring gene microRNA 483 Neighboring gene insulin-like growth factor 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in mitochondrial translation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytosolic ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in fibrillar center ISO
    Inferred from Sequence Orthology
    more info
     
    part_of mitochondrial large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of mitochondrial large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    part_of mitochondrial large ribosomal subunit ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    part_of ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    large ribosomal subunit protein uL23m
    Names
    39S ribosomal protein L23, mitochondrial
    L23 mitochondrial-related protein
    L23mt
    MRP-L23
    ribosomal protein L23-related product homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_022529.1NP_071974.1  large ribosomal subunit protein uL23m

      See identical proteins and their annotated locations for NP_071974.1

      Status: PROVISIONAL

      Source sequence(s)
      U62635
      UniProtKB/Swiss-Prot
      Q63750
      UniProtKB/TrEMBL
      A0A8L2QF35, A6HY67
      Related
      ENSRNOP00000081413.2, ENSRNOT00000104233.2
      Conserved Domains (1) summary
      pfam00276
      Location:42105
      Ribosomal_L23; Ribosomal protein L23

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      207116930..207124702
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063272761.1XP_063128831.1  large ribosomal subunit protein uL23m isoform X1

      UniProtKB/TrEMBL
      A0A8I6A0K1, A0A8L2QF35
      Related
      ENSRNOP00000085090.1, ENSRNOT00000097083.2
    2. XM_063272765.1XP_063128835.1  large ribosomal subunit protein uL23m isoform X2

      UniProtKB/TrEMBL
      A0A8I5ZRL1, A0A8L2QF35
      Related
      ENSRNOP00000104521.1, ENSRNOT00000136177.1