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    Crem cAMP responsive element modulator [ Rattus norvegicus (Norway rat) ]

    Gene ID: 25620, updated on 3-Dec-2024

    Summary

    Official Symbol
    Cremprovided by RGD
    Official Full Name
    cAMP responsive element modulatorprovided by RGD
    Primary source
    RGD:2402
    See related
    EnsemblRapid:ENSRNOG00000014900 AllianceGenome:RGD:2402
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Icer
    Summary
    Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in fatty acid metabolic process; glucose metabolic process; and retinoic acid receptor signaling pathway. Predicted to be located in cytoplasm and nucleus. Predicted to be part of ATF4-CREB1 transcription factor complex. Biomarker of transient cerebral ischemia. Orthologous to human CREM (cAMP responsive element modulator). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Adrenal (RPKM 90.5), Testes (RPKM 74.7) and 9 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Crem in Genome Data Viewer
    Location:
    17q12.1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (58932011..59001160)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (54238889..54305989)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (57021704..57090888)

    Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930596D02 gene like 2 Neighboring gene 60S ribosomal protein L29 pseudogene Neighboring gene cullin 2 Neighboring gene uncharacterized LOC108348578 Neighboring gene Histone deacetylase 1, pseudogene 12 Neighboring gene marker of proliferation Ki-67, pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in cAMP-mediated signaling TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in circadian regulation of gene expression ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in circadian rhythm ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in fatty acid metabolic process IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in glucose metabolic process IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in glycosphingolipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within glycosphingolipid metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of DNA-templated transcription ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of DNA-templated transcription ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in response to cAMP ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in retinoic acid receptor signaling pathway IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within spermatogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    part_of ATF4-CREB1 transcription factor complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
     
    part_of transcription regulator complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    cAMP-responsive element modulator
    Names
    CRE modulator
    cAMP responsive element moderator
    inducible cyclic AMP early repressor

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001110860.2NP_001104330.1  cAMP-responsive element modulator isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) represents the longest transcript and encodes isoform 3.
      Source sequence(s)
      BC078899, JAXUCZ010000017
      UniProtKB/TrEMBL
      A0A140TAC1, A6K9H0
      Related
      ENSRNOP00000090155.2, ENSRNOT00000115950.2
      Conserved Domains (2) summary
      cd14690
      Location:301355
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:112151
      pKID; pKID domain
    2. NM_001271101.1NP_001258030.1  cAMP-responsive element modulator isoform 4

      See identical proteins and their annotated locations for NP_001258030.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) uses an alternate splice site in the 3' coding region, compared to variant 3. This results in protein (isoform 4) that is the same length but has a distinct C-terminus, compared to isoform 3.
      Source sequence(s)
      BC078899, JAXUCZ010000017
      UniProtKB/Swiss-Prot
      Q03061, Q6AYV1
      UniProtKB/TrEMBL
      A0A8I6ACV8
      Conserved Domains (2) summary
      cd14690
      Location:301355
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:112151
      pKID; pKID domain
    3. NM_001271102.1NP_001258031.1  cAMP-responsive element modulator isoform 5

      See identical proteins and their annotated locations for NP_001258031.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) differs in 5' UTR and 5' coding region, compared to variant 3. This results in a protein (isoform 5) that is shorter and has a distinct N-terminus compared to isoform 3.
      Source sequence(s)
      JAXUCZ010000017
      UniProtKB/TrEMBL
      Q9R1Q5
      Conserved Domains (1) summary
      cd14690
      Location:57111
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    4. NM_001271245.1NP_001258174.1  cAMP-responsive element modulator isoform 6

      See identical proteins and their annotated locations for NP_001258174.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6) differs in both UTR's and the coding region but maintains the reading frame, compared to variant 3. This results in a protein (isoform 6) that is shorter at both the N- and C-termini, compared to isoform 3.
      Source sequence(s)
      JAXUCZ010000017
      UniProtKB/TrEMBL
      A6K9H5, Q9R1Q5
      Conserved Domains (1) summary
      cd14690
      Location:63117
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    5. NM_001271246.1NP_001258175.1  cAMP-responsive element modulator isoform 7

      See identical proteins and their annotated locations for NP_001258175.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (7) differs in 5' UTR and 5' coding region, compared to variant 3. This results in a protein (isoform 7) that has a shorter N-terminus compared to isoform 3.
      Source sequence(s)
      FM089481, JAXUCZ010000017
      UniProtKB/TrEMBL
      A0A0G2K748, A6K9H6, Q9R1Q5
      Conserved Domains (1) summary
      cd14690
      Location:46100
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    6. NM_001271247.1NP_001258176.1  cAMP-responsive element modulator isoform 8

      See identical proteins and their annotated locations for NP_001258176.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (8) differs in 5' UTR and 5' coding region, compared to variant 3. This results in a protein (isoform 8) that has a shorter N-terminus compared to isoform 3.
      Source sequence(s)
      FM033648, JAXUCZ010000017
      UniProtKB/TrEMBL
      Q9R1Q5
      Conserved Domains (1) summary
      cd14690
      Location:63117
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    7. NM_001271248.1NP_001258177.1  cAMP-responsive element modulator isoform 9

      See identical proteins and their annotated locations for NP_001258177.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (9) differs in both UTR's and the coding region but maintains the reading frame, compared to variant 3. This results in a protein (isoform 9) that is shorter at both the N- and C-termini, compared to isoform 3.
      Source sequence(s)
      CO556486, JAXUCZ010000017
      UniProtKB/TrEMBL
      A6K9H7, Q9R1Q5
      Conserved Domains (1) summary
      cd14690
      Location:3993
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    8. NM_017334.2NP_059030.2  cAMP-responsive element modulator isoform 2

      See identical proteins and their annotated locations for NP_059030.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in both UTR's and the coding region but maintains the reading frame, compared to variant 3. This results in a protein (isoform 2) that is shorter at both the N- and C-termini, compared to isoform 3.
      Source sequence(s)
      JAXUCZ010000017
      UniProtKB/TrEMBL
      A6K9H3
      Conserved Domains (1) summary
      cd14690
      Location:69123
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086035.1 Reference GRCr8

      Range
      58932011..59001160
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063276102.1XP_063132172.1  cAMP-responsive element modulator isoform X29

    2. XM_063276103.1XP_063132173.1  cAMP-responsive element modulator isoform X30

    3. XM_063276105.1XP_063132175.1  cAMP-responsive element modulator isoform X33

      UniProtKB/TrEMBL
      Q9R1Q5
    4. XM_039095385.2XP_038951313.1  cAMP-responsive element modulator isoform X36

      UniProtKB/TrEMBL
      Q9R1Q5
      Conserved Domains (1) summary
      cd14690
      Location:3993
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    5. XM_006254051.5XP_006254113.1  cAMP-responsive element modulator isoform X4

      UniProtKB/TrEMBL
      A6K9H0
      Conserved Domains (2) summary
      cd14690
      Location:285339
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:96135
      pKID; pKID domain
    6. XM_039095381.2XP_038951309.1  cAMP-responsive element modulator isoform X13

      UniProtKB/TrEMBL
      A6K9H0
      Conserved Domains (2) summary
      cd14690
      Location:236290
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:4786
      pKID; pKID domain
    7. XM_063276081.1XP_063132151.1  cAMP-responsive element modulator isoform X1

      UniProtKB/TrEMBL
      A0A140TAC1, A6K9H0
    8. XM_063276083.1XP_063132153.1  cAMP-responsive element modulator isoform X3

      UniProtKB/TrEMBL
      A0A8I6ACV8
      Related
      ENSRNOP00000083222.2, ENSRNOT00000111611.2
    9. XM_063276090.1XP_063132160.1  cAMP-responsive element modulator isoform X12

      UniProtKB/TrEMBL
      A0A0G2JYV9, A6K9H2
      Related
      ENSRNOP00000070810.2, ENSRNOT00000092187.3
    10. XM_063276092.1XP_063132162.1  cAMP-responsive element modulator isoform X15

    11. XM_063276085.1XP_063132155.1  cAMP-responsive element modulator isoform X6

      UniProtKB/TrEMBL
      A0A8L2QUF6, A6K9H0
      Related
      ENSRNOP00000062109.3, ENSRNOT00000068545.5
    12. XM_063276086.1XP_063132156.1  cAMP-responsive element modulator isoform X7

      UniProtKB/TrEMBL
      A0A8I6AD35
    13. XM_063276089.1XP_063132159.1  cAMP-responsive element modulator isoform X11

      UniProtKB/TrEMBL
      D3ZXY8
    14. XM_063276095.1XP_063132165.1  cAMP-responsive element modulator isoform X21

      UniProtKB/TrEMBL
      A6K9H2
    15. XM_063276096.1XP_063132166.1  cAMP-responsive element modulator isoform X22

      UniProtKB/TrEMBL
      A6K9H2
    16. XM_063276099.1XP_063132169.1  cAMP-responsive element modulator isoform X25

      UniProtKB/TrEMBL
      A6K9H2
    17. XM_063276082.1XP_063132152.1  cAMP-responsive element modulator isoform X2

      UniProtKB/TrEMBL
      A6K9H1
      Related
      ENSRNOP00000089944.2, ENSRNOT00000112412.2
    18. XM_063276091.1XP_063132161.1  cAMP-responsive element modulator isoform X14

      UniProtKB/TrEMBL
      A0A140TAC0, A6K9H1
      Related
      ENSRNOP00000020160.8, ENSRNOT00000020160.10
    19. XM_063276088.1XP_063132158.1  cAMP-responsive element modulator isoform X10

      UniProtKB/TrEMBL
      A6K9H1
    20. XM_063276098.1XP_063132168.1  cAMP-responsive element modulator isoform X24

      UniProtKB/TrEMBL
      A6K9H2
    21. XM_063276093.1XP_063132163.1  cAMP-responsive element modulator isoform X18

    22. XM_039095386.2XP_038951314.1  cAMP-responsive element modulator isoform X36

      UniProtKB/TrEMBL
      Q9R1Q5
      Conserved Domains (1) summary
      cd14690
      Location:3993
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    23. XM_008771692.3XP_008769914.1  cAMP-responsive element modulator isoform X35

      See identical proteins and their annotated locations for XP_008769914.1

      UniProtKB/TrEMBL
      A0A0G2K748, A6K9H6, Q9R1Q5
      Conserved Domains (1) summary
      cd14690
      Location:46100
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    24. XM_063276084.1XP_063132154.1  cAMP-responsive element modulator isoform X5

      UniProtKB/TrEMBL
      A0A8I6AD35
    25. XM_006254061.5XP_006254123.1  cAMP-responsive element modulator isoform X17

      UniProtKB/TrEMBL
      A0A8I5ZW07, D3ZXY8
      Related
      ENSRNOP00000083169.1, ENSRNOT00000096686.2
      Conserved Domains (2) summary
      cd14690
      Location:224278
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:3574
      pKID; pKID domain
    26. XM_006254062.5XP_006254124.1  cAMP-responsive element modulator isoform X19

      UniProtKB/TrEMBL
      D3ZXY8
      Conserved Domains (2) summary
      cd14690
      Location:212266
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:3574
      pKID; pKID domain
    27. XM_006254068.5XP_006254130.1  cAMP-responsive element modulator isoform X27

      Conserved Domains (2) summary
      cd14690
      Location:149203
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:3574
      pKID; pKID domain
    28. XM_063276100.1XP_063132170.1  cAMP-responsive element modulator isoform X26

    29. XM_006254060.5XP_006254122.1  cAMP-responsive element modulator isoform X16

      UniProtKB/TrEMBL
      D3ZXY8
      Related
      ENSRNOP00000074062.3, ENSRNOT00000089536.3
      Conserved Domains (2) summary
      cd14690
      Location:224278
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:3574
      pKID; pKID domain
    30. XM_063276087.1XP_063132157.1  cAMP-responsive element modulator isoform X9

      UniProtKB/TrEMBL
      A0A8I6AD35
    31. XM_063276097.1XP_063132167.1  cAMP-responsive element modulator isoform X23

    32. XM_006254054.5XP_006254116.1  cAMP-responsive element modulator isoform X8

      See identical proteins and their annotated locations for XP_006254116.1

      UniProtKB/TrEMBL
      A6K9H0
      Related
      ENSRNOP00000020204.7, ENSRNOT00000020204.8
      Conserved Domains (2) summary
      cd14690
      Location:248302
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:5998
      pKID; pKID domain
    33. XM_063276094.1XP_063132164.1  cAMP-responsive element modulator isoform X20

      UniProtKB/TrEMBL
      D3ZXY8
      Related
      ENSRNOP00000020012.7, ENSRNOT00000020012.8
    34. XM_063276101.1XP_063132171.1  cAMP-responsive element modulator isoform X28

    35. XM_063276104.1XP_063132174.1  cAMP-responsive element modulator isoform X31

      UniProtKB/TrEMBL
      A6K9H4, Q9R1Q5
    36. XM_006254069.5XP_006254131.1  cAMP-responsive element modulator isoform X31

      See identical proteins and their annotated locations for XP_006254131.1

      UniProtKB/TrEMBL
      A6K9H4, Q9R1Q5
      Conserved Domains (1) summary
      cd14690
      Location:69123
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    37. XM_006254070.5XP_006254132.1  cAMP-responsive element modulator isoform X34

      See identical proteins and their annotated locations for XP_006254132.1

      UniProtKB/TrEMBL
      Q9R1Q5
      Conserved Domains (1) summary
      cd14690
      Location:57111
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    38. XM_008771691.4XP_008769913.1  cAMP-responsive element modulator isoform X32

      See identical proteins and their annotated locations for XP_008769913.1

      UniProtKB/TrEMBL
      Q9R1Q5
      Conserved Domains (1) summary
      cd14690
      Location:63117
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_013086.1: Suppressed sequence

      Description
      NM_013086.1: This RefSeq was permanently suppressed because it contains the wrong CDS, and it is a nonsense-mediated mRNA decay (NMD) candidate.