U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Stard5 StAR related lipid transfer domain containing 5 [ Mus musculus (house mouse) ]

    Gene ID: 170460, updated on 9-Dec-2024

    Summary

    Official Symbol
    Stard5provided by MGI
    Official Full Name
    StAR related lipid transfer domain containing 5provided by MGI
    Primary source
    MGI:MGI:2156765
    See related
    Ensembl:ENSMUSG00000046027 AllianceGenome:MGI:2156765
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D7Ertd152e; 2310058G22Rik
    Summary
    Predicted to enable cholesterol binding activity and cholesterol transfer activity. Predicted to be involved in cholesterol import. Is expressed in embryo; liver; metanephros; and small intestine. Orthologous to human STARD5 (StAR related lipid transfer domain containing 5). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in kidney adult (RPKM 30.6), liver adult (RPKM 26.0) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Stard5 in Genome Data Viewer
    Location:
    7 D3; 7 47.43 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (83281225..83291536)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (83632017..83642328)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene 10610 Neighboring gene STARR-seq mESC enhancer starr_19409 Neighboring gene transmembrane channel-like gene family 3 Neighboring gene predicted gene, 16638 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:90803780-90804044 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:90809590-90809791 Neighboring gene interleukin 16 Neighboring gene STARR-positive B cell enhancer ABC_E8840 Neighboring gene 3-phosphoglycerate dehydrogenase, pseudogene 1 Neighboring gene heterogeneous nuclear ribonucleoprotein K pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (1) 

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables cholesterol binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables cholesterol binding ISA
    Inferred from Sequence Alignment
    more info
    PubMed 
    enables cholesterol binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables cholesterol transfer activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables cholesterol transfer activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables cholesterol transfer activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in cholesterol import IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in cholesterol import IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cholesterol import ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    stAR-related lipid transfer protein 5
    Names
    18B7-T7(GS)
    START domain-containing protein 5
    StAR-related lipid transfer (START) domain containing 5
    StAR-related protein 1-4E
    StAR-related protein p3-15E/p3-16E

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_023377.4NP_075866.2  stAR-related lipid transfer protein 5

      See identical proteins and their annotated locations for NP_075866.2

      Status: PROVISIONAL

      Source sequence(s)
      BC058226
      Consensus CDS
      CCDS21411.1
      UniProtKB/Swiss-Prot
      Q9CQY0, Q9EPQ6, Q9EPQ7
      Related
      ENSMUSP00000074872.8, ENSMUST00000075418.15
      Conserved Domains (1) summary
      cl14643
      Location:6211
      SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      83281225..83291536
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)