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    Ccdc137 coiled-coil domain containing 137 [ Mus musculus (house mouse) ]

    Gene ID: 67291, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ccdc137provided by MGI
    Official Full Name
    coiled-coil domain containing 137provided by MGI
    Primary source
    MGI:MGI:1914541
    See related
    Ensembl:ENSMUSG00000049957 AllianceGenome:MGI:1914541
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    3110023B02Rik
    Summary
    Predicted to be located in chromosome and fibrillar center. Predicted to be active in nucleus. Orthologous to human CCDC137 (coiled-coil domain containing 137). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in limb E14.5 (RPKM 20.4), subcutaneous fat pad adult (RPKM 11.8) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Ccdc137 in Genome Data Viewer
    Location:
    11 E2; 11 84.15 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (120348947..120355184)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (120458112..120464358)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 6G, cGMP-specific, rod, gamma Neighboring gene oxidoreductase like domain containing 1 Neighboring gene STARR-positive B cell enhancer ABC_E260 Neighboring gene ADP-ribosylation factor-like 16 Neighboring gene HGF-regulated tyrosine kinase substrate Neighboring gene mitochondrial ribosomal protein L12

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in chromosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in chromosome ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in fibrillar center IEA
    Inferred from Electronic Annotation
    more info
     
    located_in fibrillar center ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 137

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_152807.4NP_690020.1  coiled-coil domain-containing protein 137

      See identical proteins and their annotated locations for NP_690020.1

      Status: VALIDATED

      Source sequence(s)
      AL669855
      Consensus CDS
      CCDS25736.1
      UniProtKB/Swiss-Prot
      Q3U0P6, Q8R0K4
      Related
      ENSMUSP00000062540.8, ENSMUST00000058370.14
      Conserved Domains (1) summary
      PTZ00121
      Location:43188
      PTZ00121; MAEBL; Provisional

    RNA

    1. NR_184648.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL669855
    2. NR_184649.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL669855

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      120348947..120355184
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036156905.1XP_036012798.1  coiled-coil domain-containing protein 137 isoform X1

    2. XM_006533982.2XP_006534045.1  coiled-coil domain-containing protein 137 isoform X1

      See identical proteins and their annotated locations for XP_006534045.1

    3. XM_036156906.1XP_036012799.1  coiled-coil domain-containing protein 137 isoform X1