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    Pphln1-ps1 periphilin 1, pseudogene 1 [ Mus musculus (house mouse) ]

    Gene ID: 66598, updated on 14-Nov-2024

    Summary

    Official Symbol
    Pphln1-ps1provided by MGI
    Official Full Name
    periphilin 1, pseudogene 1provided by MGI
    Primary source
    MGI:MGI:1913848
    See related
    Ensembl:ENSMUSG00000121810 AllianceGenome:MGI:1913848
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    3110001I22Rik
    Summary
    Predicted to be involved in negative regulation of gene expression, epigenetic and protein localization to heterochromatin. Predicted to be active in nucleoplasm. Is expressed in early conceptus; liver; secondary oocyte; and testis. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 2.7), CNS E14 (RPKM 2.5) and 28 other tissues See more
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    Genomic context

    See Pphln1-ps1 in Genome Data Viewer
    Location:
    16; 16 A1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (13489750..13496252)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_40145 Neighboring gene predicted gene, 25276 Neighboring gene poly(A)-specific ribonuclease (deadenylation nuclease) Neighboring gene non-histone chromosomal protein HMG-14 pseudogene Neighboring gene bifunctional apoptosis regulator Neighboring gene phospholipase A2, group X Neighboring gene phospholipase A2, group X, opposite strand Neighboring gene STARR-seq mESC enhancer starr_40155 Neighboring gene RIKEN cDNA A930007A09 gene Neighboring gene STARR-seq mESC enhancer starr_40157

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_000082.7 Chromosome 16 Reference GRCm39 C57BL/6J

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_175936.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC154607
      Related
      ENSMUST00000225585.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      13489750..13496252
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)