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    Snn stannin [ Mus musculus (house mouse) ]

    Gene ID: 20621, updated on 9-Dec-2024

    Summary

    Official Symbol
    Snnprovided by MGI
    Official Full Name
    stanninprovided by MGI
    Primary source
    MGI:MGI:1276549
    See related
    Ensembl:ENSMUSG00000037972 AllianceGenome:MGI:1276549
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2810407J07Rik
    Summary
    Predicted to enable metal ion binding activity. Predicted to be located in cytoplasm. Predicted to be active in membrane. Is expressed in cerebral cortex ventricular layer and cortical plate. Orthologous to human SNN (stannin). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in CNS E18 (RPKM 67.8), CNS E14 (RPKM 61.7) and 21 other tissues See more
    Orthologs
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    Genomic context

    See Snn in Genome Data Viewer
    Location:
    16 A1; 16 6.32 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (10884162..10892849)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (11066298..11074985)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH-type containing 15 pseudogene Neighboring gene predicted gene 9861 Neighboring gene STARR-positive B cell enhancer ABC_E9926 Neighboring gene STARR-positive B cell enhancer ABC_E10889 Neighboring gene nonconserved acetylation island sequence M94 enhancer Neighboring gene thioredoxin domain containing 11 Neighboring gene zinc finger CCCH type containing 7 A Neighboring gene RIKEN cDNA 4930509G22 gene Neighboring gene predicted gene, 24145 Neighboring gene 40S ribosomal protein S2 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Clone Names

    • MGC107297

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrial outer membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009223.3NP_033249.1  stannin

      See identical proteins and their annotated locations for NP_033249.1

      Status: VALIDATED

      Source sequence(s)
      AC164093, AI848521, BY277718, CJ166486
      Consensus CDS
      CCDS37255.1
      UniProtKB/Swiss-Prot
      O88369, P61807
      UniProtKB/TrEMBL
      Q5M8P0
      Related
      ENSMUSP00000086405.5, ENSMUST00000089011.6
      Conserved Domains (1) summary
      cd20257
      Location:488
      Stannin

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      10884162..10892849
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)