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    Yipf5 Yip1 domain family, member 5 [ Mus musculus (house mouse) ]

    Gene ID: 67180, updated on 9-Dec-2024

    Summary

    Official Symbol
    Yipf5provided by MGI
    Official Full Name
    Yip1 domain family, member 5provided by MGI
    Primary source
    MGI:MGI:1914430
    See related
    Ensembl:ENSMUSG00000024487 AllianceGenome:MGI:1914430
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Yip1a; 2610311I19Rik
    Summary
    Acts upstream of or within Golgi organization and regulation of ER to Golgi vesicle-mediated transport. Located in COPII-coated ER to Golgi transport vesicle; endoplasmic reticulum exit site; and nuclear outer membrane-endoplasmic reticulum membrane network. Is expressed in Meckel's cartilage; diaphragm; heart; hindlimb muscle; and orbito-sphenoid. Orthologous to human YIPF5 (Yip1 domain family member 5). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in placenta adult (RPKM 24.2), limb E14.5 (RPKM 21.6) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Yipf5 in Genome Data Viewer
    Location:
    18 B3; 18 21.28 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (40337918..40352452, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (40204865..40219399, complement)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_44408 Neighboring gene predicted gene, 41707 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:40026376-40026644 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:40037537-40037720 Neighboring gene predicted gene, 41708 Neighboring gene STARR-seq mESC enhancer starr_44409 Neighboring gene STARR-positive B cell enhancer ABC_E1954 Neighboring gene STARR-seq mESC enhancer starr_44410 Neighboring gene STARR-seq mESC enhancer starr_44411 Neighboring gene predicted gene, 31087 Neighboring gene STARR-seq mESC enhancer starr_44413 Neighboring gene potassium channel tetramerisation domain containing 16 Neighboring gene STARR-seq mESC enhancer starr_44414 Neighboring gene STARR-seq mESC enhancer starr_44415 Neighboring gene predicted gene, 31019

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in COPII-coated ER to Golgi transport vesicle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endoplasmic reticulum exit site IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nuclear outer membrane-endoplasmic reticulum membrane network IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in trans-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    protein YIPF5
    Names
    YIP1 family member 5
    YPT-interacting protein 1 A

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_023311.3NP_075800.1  protein YIPF5

      See identical proteins and their annotated locations for NP_075800.1

      Status: VALIDATED

      Source sequence(s)
      AK010089, AV120181, BY286385
      Consensus CDS
      CCDS29207.1
      UniProtKB/Swiss-Prot
      Q9EQQ2
      Related
      ENSMUSP00000025364.5, ENSMUST00000025364.6
      Conserved Domains (1) summary
      cl21557
      Location:96257
      Yip1; Yip1 domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      40337918..40352452 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)