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    Prm1 protamine 1 [ Mus musculus (house mouse) ]

    Gene ID: 19118, updated on 9-Dec-2024

    Summary

    Official Symbol
    Prm1provided by MGI
    Official Full Name
    protamine 1provided by MGI
    Primary source
    MGI:MGI:97765
    See related
    Ensembl:ENSMUSG00000022501 AllianceGenome:MGI:97765
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Prm-1
    Summary
    Predicted to enable DNA binding activity. Acts upstream of or within nucleus organization and spermatid development. Located in male germ cell nucleus. Is expressed in testis. Orthologous to human PRM1 (protamine 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 5403.2) See more
    Orthologs
    NEW
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    Genomic context

    See Prm1 in Genome Data Viewer
    Location:
    16 A1; 16 5.87 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (10614196..10614687, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (10796332..10796823, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene protamine 3 Neighboring gene protamine 2 Neighboring gene STARR-seq mESC enhancer starr_40096 Neighboring gene 60S ribosomal protein L30-like Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:10806282-10806483 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:10814996-10815179 Neighboring gene STARR-positive B cell enhancer ABC_E8907 Neighboring gene cyclin Y-like 1 pseudogene Neighboring gene RecQ mediated genome instability 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding TAS
    Traceable Author Statement
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within chromosome condensation TAS
    Traceable Author Statement
    more info
    PubMed 
    acts_upstream_of_or_within nucleus organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in sperm DNA condensation IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within spermatid development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    NOT located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in male germ cell nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm TAS
    Traceable Author Statement
    more info
     
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus TAS
    Traceable Author Statement
    more info
    PubMed 

    General protein information

    Preferred Names
    sperm protamine P1
    Names
    cysteine-rich protamine

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_013637.5NP_038665.1  sperm protamine P1

      See identical proteins and their annotated locations for NP_038665.1

      Status: VALIDATED

      Source sequence(s)
      CT010583
      Consensus CDS
      CCDS27956.1
      UniProtKB/Swiss-Prot
      P02319
      UniProtKB/TrEMBL
      A3KMD0, C3U1Q6, C3U1Q8, C3U1Q9, C3U1R0, Q8CEM2
      Related
      ENSMUSP00000023144.6, ENSMUST00000023144.6

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      10614196..10614687 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)