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    LOC105370259 uncharacterized LOC105370259 [ Homo sapiens (human) ]

    Gene ID: 105370259, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC105370259
    Gene description
    uncharacterized LOC105370259
    See related
    Ensembl:ENSG00000235532
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in lymph node (RPKM 1.5), appendix (RPKM 0.7) and 9 other tissues See more
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    Genomic context

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    See LOC105370259 in Genome Data Viewer
    Location:
    13q22.1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (74288070..74408803)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (73510067..73630779)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (74862207..74982940)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene KLF transcription factor 12 Neighboring gene uncharacterized LOC124903182 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_33299 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_33300 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_33301 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_33303 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7817 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr13:74609849-74610779 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr13:74610780-74611709 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7818 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7819 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5399 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7820 Neighboring gene NANOG hESC enhancer GRCh37_chr13:74749652-74750153 Neighboring gene Sharpr-MPRA regulatory region 11269 Neighboring gene HNF1 motif-containing MPRA enhancer 52 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:74815323-74815876 Neighboring gene long intergenic non-protein coding RNA 402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:74861026-74861526 Neighboring gene Sharpr-MPRA regulatory region 2285 Neighboring gene NANOG hESC enhancer GRCh37_chr13:74875892-74876393 Neighboring gene RNY1 pseudogene 5 Neighboring gene ribosomal protein L21 pseudogene 108 Neighboring gene uncharacterized LOC100288208 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:75000691-75001255 Neighboring gene long intergenic non-protein coding RNA 381

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187793.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL353660, AL355390

    2. NR_187794.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL353660, AL355390
      Related
      ENST00000662433.1

    3. NR_187795.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL353660, AL355390
      Related
      ENST00000654479.1

    4. NR_187796.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL353660, AL355390
      Related
      ENST00000663108.1

    5. NR_187797.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL353660, AL355390
      Related
      ENST00000655413.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      74288070..74408803
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      73510067..73630779
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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