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    marg-1 pharyngeal MARGginal cell marker [ Caenorhabditis elegans ]

    Gene ID: 180665, updated on 9-Dec-2024

    Summary

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    Official Symbol
    marg-1
    Official Full Name
    pharyngeal MARGginal cell marker
    Primary source
    WormBase:WBGene00018538
    Locus tag
    CELE_F47B7.7
    See related
    AllianceGenome:WB:WBGene00018538
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in arcade cell; excretory cell; marginal cell; and pharyngeal epithelial cell. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See marg-1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    6
    Sequence:
    Chromosome: X; NC_003284.9 (3778056..3781140, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Sulfhydryl oxidase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes. Schrimpf SP, et al. PLoS Biol, 2009 Mar 3. PMID 19260763, Free PMC Article
    2. Transcriptomics of ivermectin response in Caenorhabditis elegans: Integrating abamectin quantitative trait loci and comparison to the Ivermectin-exposed DA1316 strain. Dube F, et al. PLoS One, 2023. PMID 37141255, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    pharyngeal MARGginal cell marker
    NP_001257004.1
    • Product from WormBase gene class marg;
      Confirmed by transcript evidence
    NP_001257005.1
    • Product from WormBase gene class marg;
      Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      3778056..3781140 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001270075.4 → NP_001257004.1  pharyngeal MARGginal cell marker [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001257004.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KZY6

    2. NM_001270076.5 → NP_001257005.1  pharyngeal MARGginal cell marker [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001257005.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      C6KRG1
    Nucleotide Protein
    Heading Accession and Version

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