U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Lyrm1 LYR motif containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 73919, updated on 9-Dec-2024

    Summary

    Official Symbol
    Lyrm1provided by MGI
    Official Full Name
    LYR motif containing 1provided by MGI
    Primary source
    MGI:MGI:1921169
    See related
    Ensembl:ENSMUSG00000030922 AllianceGenome:MGI:1921169
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1110065L10Rik; 2310004B22Rik; 4930404J24Rik
    Summary
    Located in mitochondrion. Orthologous to human LYRM1 (LYR motif containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in testis adult (RPKM 3.1), CNS E18 (RPKM 0.8) and 16 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Lyrm1 in Genome Data Viewer
    Location:
    7 F2; 7 64.31 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (119495038..119515979)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (119895713..119916756)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene acyl-CoA synthetase medium-chain family member 3 Neighboring gene exoribonuclease 2 Neighboring gene RNA exonuclease 5 Neighboring gene STARR-seq mESC enhancer starr_20039 Neighboring gene defective in cullin neddylation 1 domain containing 3 Neighboring gene STARR-positive B cell enhancer ABC_E3747 Neighboring gene STARR-seq mESC enhancer starr_20040 Neighboring gene STARR-seq mESC enhancer starr_20041 Neighboring gene dynein, axonemal, heavy chain 3 Neighboring gene predicted gene, 53369 Neighboring gene predicted gene, 25217

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in midbody IEA
    Inferred from Electronic Annotation
    more info
     
    located_in midbody ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrion HDA PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    LYR motif-containing protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001285959.1NP_001272888.1  LYR motif-containing protein 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, and 4 all encode the same protein.
      Source sequence(s)
      AC131702, BU757765, BY464772, DV043140
      Consensus CDS
      CCDS21790.1
      UniProtKB/Swiss-Prot
      Q3TZE0, Q9CQB7
      Related
      ENSMUSP00000102128.2, ENSMUST00000106518.9
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    2. NM_001285960.1NP_001272889.1  LYR motif-containing protein 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, and 4 all encode the same protein.
      Source sequence(s)
      AC131702, BU757765, BY464772, DV043140
      Consensus CDS
      CCDS21790.1
      UniProtKB/Swiss-Prot
      Q3TZE0, Q9CQB7
      Related
      ENSMUSP00000146699.2, ENSMUST00000208202.2
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    3. NM_001285961.2NP_001272890.1  LYR motif-containing protein 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, and 4 all encode the same protein.
      Source sequence(s)
      AC131702, AK009135, AK015083, BY752674
      Consensus CDS
      CCDS21790.1
      UniProtKB/Swiss-Prot
      Q3TZE0, Q9CQB7
      Related
      ENSMUSP00000051616.4, ENSMUST00000054440.11
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    4. NM_029610.3NP_083886.1  LYR motif-containing protein 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2, 3, and 4 all encode the same protein.
      Source sequence(s)
      AK009135, BY464772
      Consensus CDS
      CCDS21790.1
      UniProtKB/Swiss-Prot
      Q3TZE0, Q9CQB7
      Related
      ENSMUSP00000102127.2, ENSMUST00000106517.9
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

    RNA

    1. NR_126475.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6) contains an alternate first exon and lacks an internal exon compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
      Source sequence(s)
      AC131702

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      119495038..119515979
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006508239.5XP_006508302.1  LYR motif-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q3TZE0, Q9CQB7
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    2. XM_006508240.4XP_006508303.1  LYR motif-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q3TZE0, Q9CQB7
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    3. XM_006508237.4XP_006508300.1  LYR motif-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q3TZE0, Q9CQB7
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    4. XM_006508244.4XP_006508307.1  LYR motif-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q3TZE0, Q9CQB7
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    5. XM_006508243.4XP_006508306.1  LYR motif-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q3TZE0, Q9CQB7
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    6. XM_006508238.4XP_006508301.1  LYR motif-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q3TZE0, Q9CQB7
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    7. XM_036153480.1XP_036009373.1  LYR motif-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q3TZE0, Q9CQB7
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    8. XM_006508241.4XP_006508304.1  LYR motif-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q3TZE0, Q9CQB7
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    9. XM_006508234.5XP_006508297.1  LYR motif-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q3TZE0, Q9CQB7
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    10. XM_006508235.5XP_006508298.1  LYR motif-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q3TZE0, Q9CQB7
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    11. XM_006508236.5XP_006508299.1  LYR motif-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q3TZE0, Q9CQB7
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    12. XM_036153479.1XP_036009372.1  LYR motif-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q3TZE0, Q9CQB7
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_104377.1: Suppressed sequence

      Description
      NR_104377.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.