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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001347593.1 → NP_001334522.1 receptor-type tyrosine-protein phosphatase gamma isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) contains an alternate exon in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is much shorter than isoform 1.
- Source sequence(s)
-
AC154682, AK144283, CF724833
- Consensus CDS
-
CCDS84092.1
- UniProtKB/TrEMBL
-
Q3UND4
-
NM_008981.3 → NP_033007.2 receptor-type tyrosine-protein phosphatase gamma isoform 1 precursor
See identical proteins and their annotated locations for NP_033007.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AC154682, AK134814, BC079595, L09562
- Consensus CDS
-
CCDS26816.1
- UniProtKB/Swiss-Prot
-
Q05909
- UniProtKB/TrEMBL
- A0A991ELE1, A0AAU6PXG9
- Related
- ENSMUSP00000159543.1, ENSMUST00000248537.1
- Conserved Domains (5) summary
-
- PLN02179
Location:17 → 272
- PLN02179; carbonic anhydrase
- smart00194
Location:844 → 1115
- PTPc; Protein tyrosine phosphatase, catalytic domain
- cd00047
Location:873 → 1115
- PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
- cd00063
Location:348 → 438
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cd03122
Location:67 → 319
- alpha_CARP_receptor_like; Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000080.7 Reference GRCm39 C57BL/6J
- Range
-
10227722..10916341 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006517956.5 → XP_006518019.1 receptor-type tyrosine-protein phosphatase gamma isoform X1
- UniProtKB/TrEMBL
- A0AAU6R5M1, A0AAU6R6B2
- Conserved Domains (5) summary
-
- PRK12495
Location:613 → 689
- PRK12495; hypothetical protein; Provisional
- cd00063
Location:348 → 438
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cd03122
Location:67 → 319
- alpha_CARP_receptor_like; Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon ...
- cd17667
Location:816 → 1089
- R-PTPc-G-1; catalytic domain of receptor-type tyrosine-protein phosphatase G, repeat 1
- cd17670
Location:1173 → 1377
- R-PTP-G-2; PTP-like domain of receptor-type tyrosine-protein phosphatase G, repeat 2