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    RPS16A ribosomal 40S subunit protein S16A [ Saccharomyces cerevisiae S288C ]

    Gene ID: 855174, updated on 9-Dec-2024

    Summary

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    Official Symbol
    RPS16A
    Official Full Name
    ribosomal 40S subunit protein S16A
    Primary source
    SGD:S000004751
    Locus tag
    YMR143W
    See related
    AllianceGenome:SGD:S000004751; FungiDB:YMR143W; VEuPathDB:YMR143W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and translational initiation. Part of 90S preribosome. Orthologous to human RPS16 (ribosomal protein S16). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See RPS16A in Genome Data Viewer
    Location:
    chromosome: XIII
    Exon count:
    2
    Sequence:
    Chromosome: XIII; NC_001145.3 (551928..552903)

    Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ribosomal 60S subunit protein L13B Neighboring gene Fdo1p Neighboring gene NADH-ubiquinone reductase (H(+)-translocating) NDE1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001145.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The role of promoter elements of a ribosomal protein gene in Saccharomyces cerevisiae under various physiological conditions. Papciak SM, et al. Mol Gen Genet, 1992 Jul. PMID 1495481
    2. Role of the uS9/yS16 C-terminal tail in translation initiation and elongation in Saccharomyces cerevisiae. Jindal S, et al. Nucleic Acids Res, 2019 Jan 25. PMID 30481328, Free PMC Article
    3. Rps5-Rps16 communication is essential for efficient translation initiation in yeast S. cerevisiae. Ghosh A, et al. Nucleic Acids Res, 2014 Jul. PMID 24948608, Free PMC Article
    4. Structure and organization of two linked ribosomal protein genes in yeast. Molenaar CM, et al. Nucleic Acids Res, 1984 Oct 11. PMID 6387623, Free PMC Article
    5. Association of RAP1 binding sites with stringent control of ribosomal protein gene transcription in Saccharomyces cerevisiae. Moehle CM, et al. Mol Cell Biol, 1991 May. PMID 2017175, Free PMC Article

    See all (90) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in translational initiation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 90S preribosome HDA PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of cytosolic small ribosomal subunit NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ribosomal 40S subunit protein S16A
    NP_013863.2
    • Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S16 and bacterial S9; RPS16A has a paralog, RPS16B, that arose from the whole genome duplication

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001145.3 Reference assembly

      Range
      551928..552903
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001182645.1 → NP_013863.2  TPA: ribosomal 40S subunit protein S16A [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_013863.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VRR6, P0CX51, P0CX52, P26787, P40213
      UniProtKB/TrEMBL
      A6ZMK2, B3LGX7, C7GQ83, C8Z6M1, G2WC80, N1P5Z6
      Conserved Domains (1) summary
      PLN00210
      Location:3 → 143
      PLN00210; 40S ribosomal protein S16; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0CX51.1
    P0CX52.1

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