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    Dpt dermatopontin [ Mus musculus (house mouse) ]

    Gene ID: 56429, updated on 9-Dec-2024

    Summary

    Official Symbol
    Dptprovided by MGI
    Official Full Name
    dermatopontinprovided by MGI
    Primary source
    MGI:MGI:1928392
    See related
    Ensembl:ENSMUSG00000026574 AllianceGenome:MGI:1928392
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Eq1; EQ-1; 1810032B19Rik; 5033416F05Rik
    Summary
    Predicted to be an extracellular matrix structural constituent. Acts upstream of or within collagen fibril organization and negative regulation of cell population proliferation. Located in collagen-containing extracellular matrix. Is expressed in body wall mesenchyme; germ cell of testis; lip; and musculoskeletal system. Orthologous to human DPT (dermatopontin). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in subcutaneous fat pad adult (RPKM 128.3), mammary gland adult (RPKM 87.4) and 12 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Dpt in Genome Data Viewer
    Location:
    1 H2.2; 1 72.12 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (164624232..164651843)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (164796663..164824274)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_02880 Neighboring gene predicted gene, 26685 Neighboring gene STARR-seq mESC enhancer starr_02884 Neighboring gene STARR-seq mESC enhancer starr_02885 Neighboring gene STARR-seq mESC enhancer starr_02886 Neighboring gene STARR-seq mESC enhancer starr_02887 Neighboring gene STARR-positive B cell enhancer ABC_E11101 Neighboring gene predicted gene, 37754 Neighboring gene STARR-seq mESC enhancer starr_02888 Neighboring gene predicted gene, 32569 Neighboring gene predicted gene, 32652 Neighboring gene predicted gene, 20743 Neighboring gene chemokine (C motif) ligand 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General protein information

    Preferred Names
    dermatopontin
    Names
    TRAMP
    early quiescence protein-1
    tyrosine-rich acidic matrix protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_019759.3NP_062733.1  dermatopontin precursor

      See identical proteins and their annotated locations for NP_062733.1

      Status: VALIDATED

      Source sequence(s)
      AC137884
      Consensus CDS
      CCDS15437.1
      UniProtKB/Swiss-Prot
      Q9D2B6, Q9QZZ6
      Related
      ENSMUSP00000027861.5, ENSMUST00000027861.6
      Conserved Domains (1) summary
      pfam14704
      Location:43192
      DERM; Dermatopontin

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      164624232..164651843
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)