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    2510009E07Rik RIKEN cDNA 2510009E07 gene [ Mus musculus (house mouse) ]

    Gene ID: 72190, updated on 9-Dec-2024

    Summary

    Official Symbol
    2510009E07Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2510009E07 geneprovided by MGI
    Primary source
    MGI:MGI:1919440
    See related
    Ensembl:ENSMUSG00000043391 AllianceGenome:MGI:1919440
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be involved in circadian behavior and nervous system development. Is expressed in central nervous system; dorsal root ganglion; neural retina; and vibrissa. Orthologous to human C3orf70 (chromosome 3 open reading frame 70). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in whole brain E14.5 (RPKM 12.0), CNS E18 (RPKM 10.8) and 27 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See 2510009E07Rik in Genome Data Viewer
    Location:
    16 B1; 16 12.8 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (21467795..21513415, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (21649045..21694665, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53939 Neighboring gene STARR-seq mESC enhancer starr_40364 Neighboring gene VPS8 CORVET complex subunit Neighboring gene STARR-positive B cell enhancer mm9_chr16:21488490-21488791 Neighboring gene predicted gene, 50612 Neighboring gene STARR-positive B cell enhancer ABC_E10895 Neighboring gene STARR-positive B cell enhancer mm9_chr16:21630703-21631004 Neighboring gene STARR-positive B cell enhancer mm9_chr16:21631987-21632288 Neighboring gene STARR-seq mESC enhancer starr_40369 Neighboring gene STARR-positive B cell enhancer ABC_E11607 Neighboring gene RIKEN cDNA 1300002E11 gene Neighboring gene enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase Neighboring gene STARR-positive B cell enhancer ABC_E8908 Neighboring gene STARR-seq mESC enhancer starr_40372

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in circadian behavior ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in nervous system development IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in nervous system development ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    UPF0524 protein C3orf70 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001881.2NP_001001881.1  UPF0524 protein C3orf70 homolog

      See identical proteins and their annotated locations for NP_001001881.1

      Status: VALIDATED

      Source sequence(s)
      AC130214, CJ109106
      Consensus CDS
      CCDS28062.1
      UniProtKB/Swiss-Prot
      Q6GQU0, Q8C8Z2
      Related
      ENSMUSP00000062303.8, ENSMUST00000053336.8
      Conserved Domains (1) summary
      pfam15823
      Location:12248
      UPF0524; UPF0524 of C3orf70

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      21467795..21513415 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)