pelp1 proline, glutamate and leucine rich protein 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: pelp1provided by ZNC
Official Full Name: proline, glutamate and leucine rich protein 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-140106-164
See related: Ensembl:ENSDARG00000079313 AllianceGenome:ZFIN:ZDB-GENE-140106-164
Gene type: protein coding
RefSeq status: MODEL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to be involved in rRNA processing. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human PELP1 (proline, glutamate and leucine rich protein 1). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs: all
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Genomic context

Location:: chromosome: 7

Exon count:: 17

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (26006819..26026538)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (25735606..25755345)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

AI477914 (e-PCR)
- UniSTS:206434

fe02g09.y1 (e-PCR)
- UniSTS:195951

AI722634 (e-PCR)
- UniSTS:205996

fc29f12.x1 (e-PCR)
- UniSTS:193462

fi14e09.y1 (e-PCR)
- UniSTS:196854

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in rRNA processing	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: proline-, glutamic acid- and leucine-rich protein 1

Names: zmp:0000001204

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007118.7 Reference GRCz11 Primary Assembly

Range

26006819..26026538

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_001338982.8 → XP_001339018.3 proline-, glutamic acid- and leucine-rich protein 1

UniProtKB/TrEMBL

A0A8M1PSB8, F1RE30

Related

ENSDARP00000100297.3, ENSDART00000112908.5

Conserved Domains (3) summary

pfam08166
Location:391 → 446

NUC202; NUC202 domain

pfam05279
Location:979 → 1142

Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

pfam08167
Location:19 → 194

RIX1; rRNA processing/ribosome biogenesis