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    3110040N11Rik RIKEN cDNA 3110040N11 gene [ Mus musculus (house mouse) ]

    Gene ID: 67290, updated on 9-Dec-2024

    Summary

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    Official Symbol
    3110040N11Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 3110040N11 geneprovided by MGI
    Primary source
    MGI:MGI:1914540
    See related
    Ensembl:ENSMUSG00000025102 AllianceGenome:MGI:1914540
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be active in cytoplasm. Orthologous to human C15orf40 (chromosome 15 open reading frame 40). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 3.4), bladder adult (RPKM 3.1) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    7 D3; 7 45.71 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (81430031..81439203, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (81780283..81789499, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene G2/M-phase specific E3 ubiquitin ligase pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E6568 Neighboring gene RNA guanine-7 methyltransferase activating subunit Neighboring gene STARR-positive B cell enhancer ABC_E4944 Neighboring gene BTB domain containing 1 Neighboring gene STARR-seq mESC enhancer starr_19371 Neighboring gene predicted gene, 32695 Neighboring gene predicted gene, 51491

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    UPF0235 protein C15orf40 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001370770.2 → NP_001357699.1  UPF0235 protein C15orf40 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC102077
      Conserved Domains (1) summary
      pfam02594
      Location:91 → 161
      DUF167; Uncharacterized ACR, YggU family COG1872

    2. NM_001403364.1 → NP_001390293.1  UPF0235 protein C15orf40 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC102077

    3. NM_001403365.1 → NP_001390294.1  UPF0235 protein C15orf40 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC102077
      UniProtKB/Swiss-Prot
      Q8K3A3, Q9CRC3
      UniProtKB/TrEMBL
      Q3TDI7

    4. NM_026077.5 → NP_080353.1  UPF0235 protein C15orf40 homolog isoform 2

      See identical proteins and their annotated locations for NP_080353.1

      Status: VALIDATED

      Source sequence(s)
      AC102077
      Consensus CDS
      CCDS40010.1
      UniProtKB/Swiss-Prot
      Q8K3A3, Q9CRC3
      UniProtKB/TrEMBL
      Q3TDI7
      Related
      ENSMUSP00000026092.9, ENSMUST00000026092.9
      Conserved Domains (1) summary
      pfam02594
      Location:36 → 106
      DUF167; Uncharacterized ACR, YggU family COG1872

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      81430031..81439203 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CRC3.1 GenPept UniProtKB/Swiss-Prot:Q9CRC3

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