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    Spata2l spermatogenesis associated 2-like [ Mus musculus (house mouse) ]

    Gene ID: 78779, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Spata2lprovided by MGI
    Official Full Name
    spermatogenesis associated 2-likeprovided by MGI
    Primary source
    MGI:MGI:1926029
    See related
    Ensembl:ENSMUSG00000033594 AllianceGenome:MGI:1926029
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2610039E05Rik
    Summary
    Predicted to be active in cytoplasm. Orthologous to human SPATA2L (spermatogenesis associated 2 like). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in testis adult (RPKM 15.5), adrenal adult (RPKM 14.5) and 24 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Spata2l in Genome Data Viewer
    Location:
    8 E1; 8 72.09 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (123958994..123962997, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (123232255..123236263, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein S12, pseudogene 9 Neighboring gene charged multivesicular body protein 1A Neighboring gene spermatogenesis associated 33 Neighboring gene RIKEN cDNA 4933417D19 gene Neighboring gene cyclin dependent kinase 10 Neighboring gene VPS9 domain containing 1 Neighboring gene zinc finger protein (C2H2 type) 276 Neighboring gene Fanconi anemia, complementation group A Neighboring gene STARR-positive B cell enhancer ABC_E8971

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. ACAA2 is a ligand-dependent coactivator for thyroid hormone receptor β1. Wang W, et al. Biochem Biophys Res Commun, 2021 Oct 22. PMID 34474245, Free PMC Article
    2. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
    3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • KIAA4138

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    spermatogenesis-associated protein 2-like protein
    Names
    SPATA2-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357300.1 → NP_001344229.1  spermatogenesis-associated protein 2-like protein isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC163617
      Consensus CDS
      CCDS22752.1
      UniProtKB/Swiss-Prot
      Q3UTL5, Q5DTL7, Q8BNN1
      UniProtKB/TrEMBL
      B2RTE8
      Related
      ENSMUSP00000130306.2, ENSMUST00000166768.3

    2. NM_001357301.1 → NP_001344230.1  spermatogenesis-associated protein 2-like protein isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC163617
      Consensus CDS
      CCDS22752.1
      UniProtKB/Swiss-Prot
      Q3UTL5, Q5DTL7, Q8BNN1
      UniProtKB/TrEMBL
      B2RTE8

    3. NM_001357302.1 → NP_001344231.1  spermatogenesis-associated protein 2-like protein isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC163617

    4. NM_030176.3 → NP_084452.2  spermatogenesis-associated protein 2-like protein isoform 1

      See identical proteins and their annotated locations for NP_084452.2

      Status: VALIDATED

      Source sequence(s)
      AC163617, AK081234, AW123302
      Consensus CDS
      CCDS22752.1
      UniProtKB/Swiss-Prot
      Q3UTL5, Q5DTL7, Q8BNN1
      UniProtKB/TrEMBL
      B2RTE8
      Related
      ENSMUSP00000095932.2, ENSMUST00000098327.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      123958994..123962997 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006531504.5 → XP_006531567.1  spermatogenesis-associated protein 2-like protein isoform X1

      See identical proteins and their annotated locations for XP_006531567.1

      UniProtKB/Swiss-Prot
      Q3UTL5, Q5DTL7, Q8BNN1
      UniProtKB/TrEMBL
      B2RTE8

    2. XM_006531506.2 → XP_006531569.1  spermatogenesis-associated protein 2-like protein isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BNN1.1 GenPept UniProtKB/Swiss-Prot:Q8BNN1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
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