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    ydgA DUF945 domain-containing protein YdgA [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946172, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ydgA
    Official Full Name
    DUF945 domain-containing protein YdgA
    Primary source
    ECOCYC:G6865
    Locus tag
    b1614
    See related
    ASAP:ABE-0005402
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1609
    Summary
    HT_Cmplx48_Mem: [More information is available at EcoGene: EG12457]. YdgA has been found as a dimeric complex tethered to the inner membrane . [More information is available at EcoCyc: G6865].
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    Genomic context

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    Sequence:
    NC_000913.3 (1689852..1691360)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene fumarase A Neighboring gene mannose-6-phosphate isomerase Neighboring gene outer membrane porin family protein UidC Neighboring gene glucuronide:H(+) symporter Neighboring gene beta-glucuronidase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteomic analysis of beryllium-induced genotoxicity in an Escherichia coli mutant model system. Taylor-McCabe KJ, et al. Proteomics, 2006 Mar. PMID 16447159
    2. Systematic identification of the subproteome of Escherichia coli cell envelope reveals the interaction network of membrane proteins and membrane-associated peripheral proteins. Huang CZ, et al. J Proteome Res, 2006 Dec. PMID 17137328
    3. Identification and functional analysis of 'hypothetical' genes expressed in Haemophilus influenzae. Kolker E, et al. Nucleic Acids Res, 2004. PMID 15121896, Free PMC Article
    4. Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. Inoue T, et al. J Bacteriol, 2007 Feb. PMID 17122336, Free PMC Article
    5. A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Lasserre JP, et al. Electrophoresis, 2006 Aug. PMID 16858726

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within bacterial-type flagellum-dependent swarming motility IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DUF945 domain-containing protein YdgA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1689852..1691360
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416131.1 DUF945 domain-containing protein YdgA [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416131.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2H4TZQ2
      Conserved Domains (1) summary
      COG5339
      Location:3 → 491
      YdgA; Uncharacterized conserved protein YdgA, DUF945 family [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

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