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    ydjY 4Fe-4S ferredoxin-type domain-containing protein YdjY [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946248, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ydjY
    Official Full Name
    4Fe-4S ferredoxin-type domain-containing protein YdjY
    Primary source
    ECOCYC:G6946
    Locus tag
    b1751
    See related
    ASAP:ABE-0005834
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1749
    Summary
    First 26 aa are predicted to be a type II signal peptide. [More information is available at EcoGene: EG14001].
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    Genomic context

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    Sequence:
    NC_000913.3 (1834116..1834793)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene exodeoxyribonuclease III Neighboring gene DedA family protein YdjX Neighboring gene DedA family protein YdjZ Neighboring gene AhpD-like domain-containing protein YnjA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    2. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
    3. Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Zhang N, et al. Proteomics, 2007 Feb. PMID 17309111
    4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    4Fe-4S ferredoxin-type domain-containing protein YdjY

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1834116..1834793
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416265.4 4Fe-4S ferredoxin-type domain-containing protein YdjY [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416265.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A829LBA1, A0AAN3MDT1
    Nucleotide Protein
    Heading Accession and Version

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