U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    yceO DUF2770 domain-containing protein YceO [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945629, updated on 17-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    yceO
    Official Full Name
    DUF2770 domain-containing protein YceO
    Primary source
    ECOCYC:G6555
    Locus tag
    b1058
    See related
    ASAP:ABE-0003588
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1043
    Summary
    YceO appears to be involved in biofilm formation. [More information is available at EcoCyc: G6555].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (1119307..1119447, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YceI Neighboring gene putative cytochrome b561 YceJ Neighboring gene N-methyl-L-tryptophan oxidase Neighboring gene regulator of biofilm formation

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Global approaches for finding small RNA and small open reading frame functions. Wassarman KM, et al. J Bacteriol, 2010 Jan. PMID 19854892, Free PMC Article
    2. Small RNAs and small proteins involved in resistance to cell envelope stress and acid shock in Escherichia coli: analysis of a bar-coded mutant collection. Hobbs EC, et al. J Bacteriol, 2010 Jan. PMID 19734312, Free PMC Article
    3. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article
    4. YdgG (TqsA) controls biofilm formation in Escherichia coli K-12 through autoinducer 2 transport. Herzberg M, et al. J Bacteriol, 2006 Jan. PMID 16385049, Free PMC Article
    5. Small membrane proteins found by comparative genomics and ribosome binding site models. Hemm MR, et al. Mol Microbiol, 2008 Dec. PMID 19121005, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within response to acidic pH IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within single-species biofilm formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    DUF2770 domain-containing protein YceO

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1119307..1119447 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415576.1 DUF2770 domain-containing protein YceO [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415576.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A246W584, A0A367DJ10, A0A4S1VL01, A0AAD2S2J4, C3TEF5
      Conserved Domains (1) summary
      pfam10968
      Location:10 → 45
      DUF2770; Protein of unknown function (DUF2770)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.