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    yggE DUF541 domain-containing protein YggE [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947398, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yggE
    Official Full Name
    DUF541 domain-containing protein YggE
    Primary source
    ECOCYC:EG11244
    Locus tag
    b2922
    See related
    ASAP:ABE-0009588
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2918
    Summary
    Expression of yggE is upregulated in a superoxide dismutase-deficient strain that is exposed to oxidative stress and by UVA irradiation and elevated temperature . [More information is available at EcoCyc: EG11244].
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    Genomic context

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    Sequence:
    NC_000913.3 (3067340..3068080, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene methylmalonyl-CoA decarboxylase Neighboring gene propionyl-CoA:succinate CoA transferase Neighboring gene putative DNA-binding transcriptional regulator YgfI Neighboring gene L-arginine exporter Neighboring gene small conductance mechanosensitive channel MscS

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression of the yggE gene protects Escherichia coli from potassium tellurite-generated oxidative stress. Acuña LG, et al. Arch Microbiol, 2009 May. PMID 19330318
    2. Functionally undefined gene, yggE, alleviates oxidative stress generated by monoamine oxidase in recombinant Escherichia coli. Ojima Y, et al. Biotechnol Lett, 2009 Jan. PMID 18800193
    3. The gene yggE functions in restoring physiological defects of Escherichia coli cultivated under oxidative stress conditions. Kim SY, et al. Appl Environ Microbiol, 2005 May. PMID 15870370, Free PMC Article
    4. Identification, molecular cloning and sequence analysis of a gene cluster encoding the class II fructose 1,6-bisphosphate aldolase, 3-phosphoglycerate kinase and a putative second glyceraldehyde 3-phosphate dehydrogenase of Escherichia coli. Alefounder PR, et al. Mol Microbiol, 1989 Jun. PMID 2546007
    5. SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences. Lacour S, et al. J Bacteriol, 2004 Nov. PMID 15489429, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    involved_in DNA damage response IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within DNA damage response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within cellular response to heat IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within cellular response to reactive oxygen species IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within cellular response to reactive oxygen species IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DUF541 domain-containing protein YggE

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3067340..3068080 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417397.1 DUF541 domain-containing protein YggE [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417397.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A895NUI5
      Conserved Domains (1) summary
      PRK11087
      Location:8 → 234
      PRK11087; oxidative stress defense protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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