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    ybeF putative DNA-binding transcriptional regulator YbeF [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945219, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ybeF
    Official Full Name
    putative DNA-binding transcriptional regulator YbeF
    Primary source
    ECOCYC:EG11594
    Locus tag
    b0629
    See related
    ASAP:ABE-0002158
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0622
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    Genomic context

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    Sequence:
    NC_000913.3 (660425..661378, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene twin arginine protein translocation system - TatE protein Neighboring gene lipoyl synthase Neighboring gene lipoyl(octanoyl) transferase Neighboring gene DUF493 domain-containing protein YbeD

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Lipoic acid metabolism in Escherichia coli: sequencing and functional characterization of the lipA and lipB genes. Reed KE, et al. J Bacteriol, 1993 Mar. PMID 8444795, Free PMC Article
    2. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
    3. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative DNA-binding transcriptional regulator YbeF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      660425..661378 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415162.4 putative DNA-binding transcriptional regulator YbeF [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415162.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1V2G913
      Conserved Domains (1) summary
      PRK11482
      Location:1 → 317
      PRK11482; DNA-binding transcriptional regulator
    Nucleotide Protein
    Heading Accession and Version

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