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    ynfB DUF1283 domain-containing protein YnfB [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946119, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ynfB
    Official Full Name
    DUF1283 domain-containing protein YnfB
    Primary source
    ECOCYC:G6841
    Locus tag
    b1583
    See related
    ASAP:ABE-0005284
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1578
    Summary
    First 28 aa are predicted to be a type I signal peptide. [More information is available at EcoGene: EG13840].
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    Genomic context

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    Sequence:
    NC_000913.3 (1655808..1656149)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene mandelate racemase/muconate lactonizing enzyme family protein RspA Neighboring gene putative transporter YnfA Neighboring gene spermidine N-acetyltransferase Neighboring gene PF06788 family lipoprotein YnfC

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Systematic Localization of Escherichia coli Membrane Proteins. Sueki A, et al. mSystems, 2020 Mar 3. PMID 32127419, Free PMC Article
    2. Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth. Lopez-Campistrous A, et al. Mol Cell Proteomics, 2005 Aug. PMID 15911532
    3. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043
    4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell outer membrane HTP PubMed 
    located_in cell outer membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DUF1283 domain-containing protein YnfB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1655808..1656149
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416100.1 DUF1283 domain-containing protein YnfB [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416100.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7HSQ7
      Conserved Domains (1) summary
      PRK13659
      Location:11 → 113
      PRK13659; DUF1283 family protein
    Nucleotide Protein
    Heading Accession and Version

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