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    Pilra paired immunoglobin-like type 2 receptor alpha [ Mus musculus (house mouse) ]

    Gene ID: 231805, updated on 27-Nov-2024

    Summary

    Official Symbol
    Pilraprovided by MGI
    Official Full Name
    paired immunoglobin-like type 2 receptor alphaprovided by MGI
    Primary source
    MGI:MGI:2450529
    See related
    Ensembl:ENSMUSG00000046245 AllianceGenome:MGI:2450529
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    FDF03
    Summary
    Predicted to enable MHC class I protein binding activity. Predicted to act upstream of or within signal transduction. Predicted to be located in cell periphery and membrane. Is expressed in heart ventricle; lung; and urethra. Orthologous to several human genes including PILRA (paired immunoglobin like type 2 receptor alpha). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in spleen adult (RPKM 6.1), bladder adult (RPKM 3.6) and 25 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Pilra in Genome Data Viewer
    Location:
    5 G2; 5 76.77 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (137820214..137834540, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (137821952..137836278, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E4797 Neighboring gene protein phosphatase 1, regulatory subunit 35 Neighboring gene STARR-positive B cell enhancer ABC_E857 Neighboring gene STARR-positive B cell enhancer ABC_E1312 Neighboring gene STARR-positive B cell enhancer ABC_E4798 Neighboring gene methylphosphate capping enzyme Neighboring gene zinc finger, CW type with PWWP domain 1 Neighboring gene STARR-seq mESC enhancer starr_14656 Neighboring gene paired immunoglobin-like type 2 receptor beta 1 Neighboring gene STARR-seq mESC enhancer starr_14658 Neighboring gene predicted gene, 36551 Neighboring gene paired immunoglobin-like type 2 receptor beta 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables MHC class I protein binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within signal transduction ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cell periphery IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    paired immunoglobulin-like type 2 receptor alpha
    Names
    cell surface receptor FDF03
    inhibitory receptor PILR-alpha

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_153510.3NP_705730.1  paired immunoglobulin-like type 2 receptor alpha precursor

      See identical proteins and their annotated locations for NP_705730.1

      Status: VALIDATED

      Source sequence(s)
      AC125063, AK041670, BB583033, BY171703
      Consensus CDS
      CCDS19780.1
      UniProtKB/Swiss-Prot
      Q2YFS3, Q8BYA6
      Related
      ENSMUSP00000050313.5, ENSMUST00000058897.11
      Conserved Domains (2) summary
      cl00686
      Location:198261
      NfeD; NfeD-like C-terminal, partner-binding
      cl11960
      Location:40134
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      137820214..137834540 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)