U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Hsph1 heat shock 105kDa/110kDa protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 15505, updated on 9-Dec-2024

    Summary

    Official Symbol
    Hsph1provided by MGI
    Official Full Name
    heat shock 105kDa/110kDa protein 1provided by MGI
    Primary source
    MGI:MGI:105053
    See related
    Ensembl:ENSMUSG00000029657 AllianceGenome:MGI:105053
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    105kDa; Hsp105; Hsp110; hsp-E7I; hsp110/105
    Summary
    Enables alpha-tubulin binding activity. Acts upstream of or within chaperone cofactor-dependent protein refolding. Colocalizes with microtubule. Is expressed in several structures, including branchial arch; central nervous system; genitourinary system; gut; and limb. Orthologous to human HSPH1 (heat shock protein family H (Hsp110) member 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in cortex adult (RPKM 30.2), CNS E11.5 (RPKM 29.9) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Hsph1 in Genome Data Viewer
    Location:
    5 G3; 5 89.18 cM
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (149540308..149562594, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (149616843..149636498, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene 15997 Neighboring gene WD40 repeat domain 95 Neighboring gene predicted gene, 54316 Neighboring gene STARR-seq mESC enhancer starr_14938 Neighboring gene predicted gene, 35763 Neighboring gene STARR-positive B cell enhancer ABC_E3638 Neighboring gene STARR-positive B cell enhancer ABC_E1317 Neighboring gene STARR-seq mESC enhancer starr_14940 Neighboring gene predicted gene, 20005 Neighboring gene NME/NM23 nucleoside diphosphate kinase, pseudogene 1 Neighboring gene beta-3-glucosyltransferase Neighboring gene STARR-seq mESC enhancer starr_14941 Neighboring gene predicted gene, 36141

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 
    • Targeted (2)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables ATP-dependent protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
     
    enables adenyl-nucleotide exchange factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables adenyl-nucleotide exchange factor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables adenyl-nucleotide exchange factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables alpha-tubulin binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in extracellular region TAS
    Traceable Author Statement
    more info
    PubMed 
    colocalizes_with microtubule IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of protein-containing complex IEA
    Inferred from Electronic Annotation
    more info
     
    part_of protein-containing complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    heat shock protein 105 kDa
    Names
    42 degrees C-HSP
    HSP105 42 C-HSP
    heat shock 110 kDa protein
    heat shock protein 110
    heat shock-related 100 kDa protein E7I

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001347534.1NP_001334463.1  heat shock protein 105 kDa isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
      Source sequence(s)
      AC119856
      Consensus CDS
      CCDS85010.1
      UniProtKB/TrEMBL
      E9Q0U7
      Related
      ENSMUSP00000074392.9, ENSMUST00000074846.14
    2. NM_013559.2NP_038587.2  heat shock protein 105 kDa isoform 1

      See identical proteins and their annotated locations for NP_038587.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AK146697, AK165046, AK172913, CF164049
      Consensus CDS
      CCDS19885.1
      UniProtKB/Swiss-Prot
      Q3TNS2, Q3UIY8, Q61699, Q62578, Q62579, Q6A0A5, Q8C430, Q8VCW6
      UniProtKB/TrEMBL
      E9Q0U7
      Related
      ENSMUSP00000144413.2, ENSMUST00000202361.4
      Conserved Domains (3) summary
      cd11739
      Location:2384
      HSPH1_NBD; Nucleotide-binding domain of HSPH1
      pfam00012
      Location:3709
      HSP70; Hsp70 protein
      pfam13552
      Location:660742
      DUF4127; Protein of unknown function (DUF4127)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      149540308..149562594 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006504916.4XP_006504979.1  heat shock protein 105 kDa isoform X2

      UniProtKB/TrEMBL
      E9Q0U7
      Conserved Domains (3) summary
      COG3087
      Location:537620
      FtsN; Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning]
      pfam13552
      Location:673761
      DUF4127; Protein of unknown function (DUF4127)
      cl17037
      Location:56403
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily
    2. XM_030254168.2XP_030110028.1  heat shock protein 105 kDa isoform X1

      UniProtKB/TrEMBL
      E9Q0U7
      Conserved Domains (3) summary
      COG3087
      Location:425508
      FtsN; Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning]
      pfam13552
      Location:561649
      DUF4127; Protein of unknown function (DUF4127)
      cl17037
      Location:1291
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily