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    yaaY DUF2575 domain-containing protein YaaY [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 949128, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yaaY
    Official Full Name
    DUF2575 domain-containing protein YaaY
    Primary source
    ECOCYC:G6087
    Locus tag
    b0024
    See related
    ASAP:ABE-0000089
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0025
    Summary
    YaaY has an N-terminal lipobox LAGC, but does not have the other features characteristic of a signal peptide and is probably not a lipoprotein. [More information is available at EcoGene: EG14386].
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    Genomic context

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    Sequence:
    NC_000913.3 (21181..21399)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene IS1 family protein InsB Neighboring gene IS1 family protein InsA Neighboring gene 30S ribosomal subunit protein S20 Neighboring gene bifunctional riboflavin kinase/FMN adenylyltransferase Neighboring gene isoleucine--tRNA ligase Neighboring gene lipoprotein signal peptidase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phyletic profiling with cliques of orthologs is enhanced by signatures of paralogy relationships. Skunca N, et al. PLoS Comput Biol, 2013. PMID 23308060, Free PMC Article
    2. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    3. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DUF2575 domain-containing protein YaaY

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      21181..21399
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414565.1 DUF2575 domain-containing protein YaaY [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414565.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1V2GHF2
    Nucleotide Protein
    Heading Accession and Version

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