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    ymgD PF16456 family protein YmgD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945732, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ymgD
    Official Full Name
    PF16456 family protein YmgD
    Primary source
    ECOCYC:G6611
    Locus tag
    b1171
    See related
    ASAP:ABE-0003926
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1158
    Summary
    First 19 aa are predicted to be a type I signal peptide.YmgD has no homologs detected. [More information is available at EcoGene: EG14292].
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    Genomic context

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    Sequence:
    NC_000913.3 (1222305..1222634, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene inner membrane protein YmgF Neighboring gene pseudo Neighboring gene PF13436 family protein YmgG Neighboring gene uncharacterized protein YmgI

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Probing the Structure of the Escherichia coli Periplasmic Proteins HdeA and YmgD by Molecular Dynamics Simulations. Socher E, et al. J Phys Chem B, 2016 Nov 23. PMID 27787971
    2. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    3. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    4. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in outer membrane-bounded periplasmic space TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PF16456 family protein YmgD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1222305..1222634 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415689.2 PF16456 family protein YmgD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415689.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A140ND76, A0A2X1K5Y3, A0A3K2YTZ2, A0A6D0DHX1, A0A6D0IBE8, A0A8S7LFB1, A0A8T6BRW3, A0AAD2NW83
      Conserved Domains (1) summary
      pfam16456
      Location:26 → 107
      YmgD; YmgD protein
    Nucleotide Protein
    Heading Accession and Version

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