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    ypdF aminopeptidase YpdF [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946853, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ypdF
    Official Full Name
    aminopeptidase YpdF
    Primary source
    ECOCYC:G7248
    Locus tag
    b2385
    See related
    ASAP:ABE-0007869
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2381
    Summary
    YpdF has limited methionine aminopeptidase activity. [More information is available at EcoGene: EG14153]. YpdF is a metalloenzyme with aminopeptidase activity. [More information is available at EcoCyc: G7248].
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    Genomic context

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    Sequence:
    NC_000913.3 (2505547..2506632, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative PTS multiphosphoryl transfer protein FryA Neighboring gene aminopeptidase YpdE Neighboring gene putative PTS enzyme IIC component FryC Neighboring gene putative PTS enzyme IIB component FryB

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of two new aminopeptidases in Escherichia coli. Zheng Y, et al. J Bacteriol, 2005 Jun. PMID 15901689, Free PMC Article
    2. Molecular cloning, expression and characterization of three distinctive genes encoding methionine aminopeptidases in cyanobacterium Synechocystis sp. strain PCC6803. Atanassova A, et al. Arch Microbiol, 2003 Sep. PMID 12861438
    3. MEROPS: the peptidase database. Rawlings ND, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381862, Free PMC Article
    4. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
    5. Structures and activities of widely conserved small prokaryotic aminopeptidases-P clarify classification of M24B peptidases. Are VN, et al. Proteins, 2019 Mar. PMID 30536999

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables aminopeptidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables aminopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metalloaminopeptidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables metalloexopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transition metal ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within proteolysis IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    aminopeptidase YpdF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2505547..2506632 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416886.1 aminopeptidase YpdF [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416886.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376WV70, A0A8T6BM60
      Conserved Domains (1) summary
      PRK09795
      Location:1 → 361
      PRK09795; aminopeptidase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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