U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    yhcD putative fimbrial usher protein YhcD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947738, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    yhcD
    Official Full Name
    putative fimbrial usher protein YhcD
    Primary source
    ECOCYC:G7670
    Locus tag
    b3216
    See related
    ASAP:ABE-0010554
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3206
    Summary
    FimD family. [More information is available at EcoGene: EG12810].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (3362807..3365188)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene periplasmic protein GltF Neighboring gene putative fimbrial chaperone YhcA Neighboring gene pseudo Neighboring gene IS5 family transposase and trans-activator Neighboring gene DUF1120 domain-containing protein YhcF

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Evidence for a novel domain of bacterial outer membrane ushers. Capitani G, et al. Proteins, 2006 Dec 1. PMID 17066380
    2. Bacterial outer membrane ushers contain distinct targeting and assembly domains for pilus biogenesis. Thanassi DG, et al. J Bacteriol, 2002 Nov. PMID 12399496, Free PMC Article
    3. Analysis of the requirements for pilus biogenesis at the outer membrane usher and the function of the usher C-terminus. So SS, et al. Mol Microbiol, 2006 Apr. PMID 16573686
    4. The outer membrane usher forms a twin-pore secretion complex. Li H, et al. J Mol Biol, 2004 Dec 10. PMID 15561151
    5. Chaperone-subunit-usher interactions required for donor strand exchange during bacterial pilus assembly. Barnhart MM, et al. J Bacteriol, 2003 May. PMID 12700251, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables fimbrial usher porin activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables fimbrial usher porin activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in pilus assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in pilus assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cell outer membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cell outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    putative fimbrial usher protein YhcD

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3362807..3365188
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417683.1 putative fimbrial usher protein YhcD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417683.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6M9WXX2, A0AAI9GVT3
      Conserved Domains (1) summary
      PRK15304
      Location:1 → 793
      PRK15304; putative fimbrial outer membrane usher protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.