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    alsB D-allose ABC transporter periplasmic binding protein [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948604, updated on 3-Dec-2024

    Summary

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    Official Symbol
    alsB
    Official Full Name
    D-allose ABC transporter periplasmic binding protein
    Primary source
    ECOCYC:EG12458
    Locus tag
    b4088
    See related
    ASAP:ABE-0013398
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK4081; yjcX
    Summary
    First 23 aa are predicted to be a type I signal peptide. [More information is available at EcoGene: EG12458]. AlsB is the periplasmic substrate-binding component of the allose ABC transporter. [More information is available at EcoCyc: EG12458].
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    Genomic context

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    Sequence:
    NC_000913.3 (4311107..4312042, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene D-allose kinase Neighboring gene D-allulose-6-phosphate 3-epimerase Neighboring gene D-allose ABC transporter membrane subunit Neighboring gene D-allose ABC transporter ATP binding subunit Neighboring gene DNA-binding transcriptional repressor AlsR Neighboring gene allose-6-phosphate isomerase/ribose-5-phosphate isomerase B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Hinge-bending motion of D-allose-binding protein from Escherichia coli: three open conformations. Magnusson U, et al. J Biol Chem, 2002 Apr 19. PMID 11825912
    2. Structure of D-allose binding protein from Escherichia coli bound to D-allose at 1.8 A resolution. Chaudhuri BN, et al. J Mol Biol, 1999 Mar 12. PMID 10064713
    3. Sequence relationships between integral inner membrane proteins of binding protein-dependent transport systems: evolution by recurrent gene duplications. Saurin W, et al. Protein Sci, 1994 Feb. PMID 8003968, Free PMC Article
    4. D-Allose catabolism of Escherichia coli: involvement of alsI and regulation of als regulon expression by allose and ribose. Poulsen TS, et al. J Bacteriol, 1999 Nov. PMID 10559180, Free PMC Article
    5. Comparison of the large-scale periplasmic proteomes of the Escherichia coli K-12 and B strains. Han MJ, et al. J Biosci Bioeng, 2014 Apr. PMID 24140104

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables monosaccharide binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables monosaccharide binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within D-allose transmembrane transport EXP
    Inferred from Experiment
    more info
    		 PubMed 
    involved_in D-allose transmembrane transport NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in D-ribose transmembrane transport NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in membrane HDA PubMed 
    located_in membrane NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    is_active_in outer membrane-bounded periplasmic space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in outer membrane-bounded periplasmic space IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in periplasmic space IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    D-allose ABC transporter periplasmic binding protein
    NP_418512.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4311107..4312042 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418512.1 D-allose ABC transporter periplasmic binding protein [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418512.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6L9A9V5
      Conserved Domains (1) summary
      PRK09701
      Location:1 → 311
      PRK09701; D-allose transporter substrate-binding protein
    Nucleotide Protein
    Heading Accession and Version

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