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    5430425K12Rik RIKEN cDNA 5430425K12 gene [ Mus musculus (house mouse) ]

    Gene ID: 71416, updated on 17-Aug-2024

    Summary

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    Official Symbol
    5430425K12Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 5430425K12 geneprovided by MGI
    Primary source
    MGI:MGI:1918666
    See related
    AllianceGenome:MGI:1918666
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human all
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    Genomic context

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    See 5430425K12Rik in Genome Data Viewer
    Location:
    13; 13 C2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (81088522..81096716)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (80940403..80948597)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_35104 Neighboring gene 40S ribosomal protein S8 pseudogene Neighboring gene STARR-seq mESC enhancer starr_35105 Neighboring gene STARR-seq mESC enhancer starr_35106 Neighboring gene STARR-seq mESC enhancer starr_35107 Neighboring gene STARR-seq mESC enhancer starr_35108 Neighboring gene STARR-seq mESC enhancer starr_35109 Neighboring gene STARR-seq mESC enhancer starr_35110 Neighboring gene STARR-positive B cell enhancer ABC_E7255 Neighboring gene STARR-positive B cell enhancer ABC_E7256 Neighboring gene STARR-positive B cell enhancer ABC_E4081 Neighboring gene STARR-seq mESC enhancer starr_35112 Neighboring gene STARR-positive B cell enhancer ABC_E3087 Neighboring gene arrestin domain containing 3 Neighboring gene STARR-seq mESC enhancer starr_35115 Neighboring gene RIKEN cDNA 9330111N05 gene Neighboring gene STARR-seq mESC enhancer starr_35116 Neighboring gene predicted gene 4211 Neighboring gene zinc finger and BTB domain containing 44 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The human (PEDB) and mouse (mPEDB) Prostate Expression Databases. Nelson PS, et al. Nucleic Acids Res, 2002 Jan 1. PMID 11752298, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_103550.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CT009711

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      81088522..81096716
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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