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    CCDC144CP coiled-coil domain containing 144C, pseudogene [ Homo sapiens (human) ]

    Gene ID: 348254, updated on 10-Dec-2024

    Summary

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    Official Symbol
    CCDC144CPprovided by HGNC
    Official Full Name
    coiled-coil domain containing 144C, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:29073
    See related
    AllianceGenome:HGNC:29073
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CCDC144C
    Expression
    Broad expression in testis (RPKM 7.0), placenta (RPKM 2.0) and 15 other tissues See more
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    Genomic context

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    See CCDC144CP in Genome Data Viewer
    Location:
    17p11.2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (20321174..20402191)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (20269840..20350841)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (20224487..20305504)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene sperm antigen with calponin homology and coiled-coil domains 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:20039526-20039742 Neighboring gene RNA, U6 small nuclear 258, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20046676-20047184 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8306 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8307 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8308 Neighboring gene Sharpr-MPRA regulatory region 374 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20135138-20135638 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20184836-20185336 Neighboring gene RNA, U6 small nuclear 1057, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20218551-20219051 Neighboring gene RNA, U6 small nuclear 467, pseudogene Neighboring gene UPF3A pseudogene 2 Neighboring gene ubiquitin specific peptidase 32 pseudogene 3 Neighboring gene signal recognition particle 68 pseudogene 3 Neighboring gene family with sequence similarity 106 member B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs. Park SS, et al. Genome Res, 2002 May. PMID 11997339, Free PMC Article
    2. Two-Dimensional Fractionation Method for Proteome-Wide Cross-Linking Mass Spectrometry Analysis. Jiao F, et al. Anal Chem, 2022 Mar 15. PMID 35235311, Free PMC Article
    3. VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Yue Y, et al. Cell Discov, 2018. PMID 29507755, Free PMC Article
    4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • coiled-coil domain containing 144 pseudogene

    Clone Names

    • KIAA0565

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_023380.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AC008088, AC015818, AL162090, AL162091, DA321951, DV080283, DV080284

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      20321174..20402191
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      20269840..20350841
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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