U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Spata9 spermatogenesis associated 9 [ Mus musculus (house mouse) ]

    Gene ID: 75571, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Spata9provided by MGI
    Official Full Name
    spermatogenesis associated 9provided by MGI
    Primary source
    MGI:MGI:1922821
    See related
    Ensembl:ENSMUSG00000021590 AllianceGenome:MGI:1922821
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700030K01Rik; 4930599C08Rik; A930023H06Rik
    Summary
    Predicted to be involved in cell differentiation and spermatogenesis. Predicted to be located in membrane. Orthologous to human SPATA9 (spermatogenesis associated 9). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in testis adult (RPKM 16.0) and CNS E18 (RPKM 0.4) See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Spata9 in Genome Data Viewer
    Location:
    13 C1; 13 40.95 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (76108113..76147106)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (75959970..75998987)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene Rho-related BTB domain containing 3 Neighboring gene WD repeat domain 77 pseudogene Neighboring gene ribosomal protein S2 pseudogene Neighboring gene predicted gene, 23319 Neighboring gene STARR-positive B cell enhancer mm9_chr13:76130188-76130489 Neighboring gene Rieske (Fe-S) domain containing Neighboring gene STARR-seq mESC enhancer starr_35056 Neighboring gene STARR-positive B cell enhancer ABC_E11548 Neighboring gene 60S ribosomal protein L36a-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. NYD-SP16, a novel gene associated with spermatogenesis of human testis. Cheng LJ, et al. Biol Reprod, 2003 Jan. PMID 12493713
    2. Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2016 Jul 12. PMID 27357688, Free PMC Article
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    spermatogenesis-associated protein 9

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029343.3 → NP_083619.1  spermatogenesis-associated protein 9

      See identical proteins and their annotated locations for NP_083619.1

      Status: PROVISIONAL

      Source sequence(s)
      AC122242
      Consensus CDS
      CCDS26653.1
      UniProtKB/Swiss-Prot
      Q9D4M8, Q9D9R3
      Related
      ENSMUSP00000022081.2, ENSMUST00000022081.3
      Conserved Domains (1) summary
      pfam15824
      Location:1 → 252
      SPATA9; Spermatogenesis-associated protein 9

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      76108113..76147106
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030247441.2 → XP_030103301.1  spermatogenesis-associated protein 9 isoform X5

      Conserved Domains (1) summary
      pfam15824
      Location:1 → 158
      SPATA9; Spermatogenesis-associated protein 9

    2. XM_006517442.4 → XP_006517505.1  spermatogenesis-associated protein 9 isoform X1

      See identical proteins and their annotated locations for XP_006517505.1

      UniProtKB/Swiss-Prot
      Q9D4M8, Q9D9R3
      Conserved Domains (1) summary
      pfam15824
      Location:1 → 252
      SPATA9; Spermatogenesis-associated protein 9

    3. XM_006517444.5 → XP_006517507.1  spermatogenesis-associated protein 9 isoform X2

      Conserved Domains (1) summary
      pfam15824
      Location:1 → 224
      SPATA9; Spermatogenesis-associated protein 9

    4. XM_006517446.4 → XP_006517509.1  spermatogenesis-associated protein 9 isoform X4

      Conserved Domains (1) summary
      pfam15824
      Location:1 → 190
      SPATA9; Spermatogenesis-associated protein 9

    5. XM_036158203.1 → XP_036014096.1  spermatogenesis-associated protein 9 isoform X3

      Conserved Domains (1) summary
      pfam15824
      Location:1 → 220
      SPATA9; Spermatogenesis-associated protein 9

    6. XM_036158204.1 → XP_036014097.1  spermatogenesis-associated protein 9 isoform X6

      Conserved Domains (1) summary
      pfam15824
      Location:1 → 131
      SPATA9; Spermatogenesis-associated protein 9

    7. XM_006517443.5 → XP_006517506.1  spermatogenesis-associated protein 9 isoform X1

      See identical proteins and their annotated locations for XP_006517506.1

      UniProtKB/Swiss-Prot
      Q9D4M8, Q9D9R3
      Conserved Domains (1) summary
      pfam15824
      Location:1 → 252
      SPATA9; Spermatogenesis-associated protein 9
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9D9R3.1 GenPept UniProtKB/Swiss-Prot:Q9D9R3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools