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    1700001F09Rik RIKEN cDNA 1700001F09 gene [ Mus musculus (house mouse) ]

    Gene ID: 71826, updated on 27-Nov-2024

    Summary

    Official Symbol
    1700001F09Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700001F09 geneprovided by MGI
    Primary source
    MGI:MGI:1919076
    See related
    Ensembl:ENSMUSG00000095384 AllianceGenome:MGI:1919076
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm10377
    Expression
    Restricted expression toward testis adult (RPKM 11.2) See more
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    Genomic context

    See 1700001F09Rik in Genome Data Viewer
    Location:
    14 B; 14 22.48 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (43199841..43205268, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (43342384..43347811, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_36501 Neighboring gene predicted gene 8126 Neighboring gene predicted gene, 53218 Neighboring gene STARR-seq mESC enhancer starr_36502 Neighboring gene predicted gene 9732 Neighboring gene predicted gene 8127 Neighboring gene STARR-seq mESC enhancer starr_36503 Neighboring gene predicted gene 9597 Neighboring gene predicted gene, 21154 Neighboring gene predicted gene 8138 Neighboring gene predicted gene, 21162

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General protein information

    Preferred Names
    uncharacterized protein LOC71826

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027940.2NP_082216.1  uncharacterized protein LOC71826

      See identical proteins and their annotated locations for NP_082216.1

      Status: PREDICTED

      Source sequence(s)
      AK005587
      Consensus CDS
      CCDS49459.1
      UniProtKB/TrEMBL
      L7N292, Q6P8U7, Q9DAR5
      Related
      ENSMUSP00000136772.2, ENSMUST00000178178.2
      Conserved Domains (1) summary
      pfam04822
      Location:1287
      Takusan; Takusan

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      43199841..43205268 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)