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    elyC envelope biogenesis factor [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945546, updated on 17-Dec-2024

    Summary

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    Official Symbol
    elyC
    Official Full Name
    envelope biogenesis factor
    Primary source
    ECOCYC:EG12166
    Locus tag
    b0920
    See related
    ASAP:ABE-0003127
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0911; ycbC
    Summary
    ydcF and ycbC (COG1434) and sanA and yjgQ (COG2949) are four members of the DUF218 superfamily (PF02698). [More information is available at EcoGene: EG12166].
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    Genomic context

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    Sequence:
    NC_000913.3 (972622..973401, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene interstrand DNA crosslink repair glycosylase Neighboring gene PF03966 family protein YcaR Neighboring gene 3-deoxy-manno-octulosonate cytidylyltransferase Neighboring gene putative phosphotransferase YcbJ Neighboring gene tRNA cmo(5)U34 methyltransferase Neighboring gene chromosome partitioning protein MukF Neighboring gene chromosome partitioning protein MukE Neighboring gene chromosome partitioning protein MukB

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ElyC and Cyclic Enterobacterial Common Antigen Regulate Synthesis of Phosphoglyceride-Linked Enterobacterial Common Antigen. Rai AK, et al. mBio, 2021 Dec 21. PMID 34809459, Free PMC Article
    2. The Chaperone Activities of DsbG and Spy Restore Peptidoglycan Biosynthesis in the elyC Mutant by Preventing Envelope Protein Aggregation. Kouidmi I, et al. J Bacteriol, 2018 Oct 1. PMID 30012727, Free PMC Article
    3. New killing system controlled by two genes located immediately upstream of the mukB gene in Escherichia coli. Feng J, et al. Mol Gen Genet, 1994 Apr. PMID 7513784
    4. The Escherichia coli YdcF binds S-adenosyl-L-methionine and adopts an alpha/beta-fold characteristic of nucleotide-utilizing enzymes. Chao KL, et al. Proteins, 2008 Jul. PMID 18393394
    5. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ElyC and Cyclic Enterobacterial Common Antigen Regulate Synthesis of Phosphoglyceride-Linked Enterobacterial Common Antigen.
      Title: ElyC and Cyclic Enterobacterial Common Antigen Regulate Synthesis of Phosphoglyceride-Linked Enterobacterial Common Antigen.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within Gram-negative-bacterium-type cell wall biogenesis EXP
    Inferred from Experiment
    more info
    		 PubMed 
    involved_in Gram-negative-bacterium-type cell wall biogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within Gram-negative-bacterium-type cell wall biogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in cell wall organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within peptidoglycan metabolic process EXP
    Inferred from Experiment
    more info
    		 PubMed 
    involved_in peptidoglycan metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within peptidoglycan metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within protein folding IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    envelope biogenesis factor

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      972622..973401 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415440.1 envelope biogenesis factor [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415440.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7A6XK17, A0A8S7E6W4, A0AAD2YVT0, A0AAN3KLE1
      Conserved Domains (1) summary
      PRK10494
      Location:1 → 259
      PRK10494; envelope biogenesis factor ElyC
    Nucleotide Protein
    Heading Accession and Version

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