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    LINC01393 long intergenic non-protein coding RNA 1393 [ Homo sapiens (human) ]

    Gene ID: 102724386, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01393provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1393provided by HGNC
    Primary source
    HGNC:HGNC:50669
    See related
    Ensembl:ENSG00000225535 AllianceGenome:HGNC:50669
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01393 in Genome Data Viewer
    Location:
    7q31.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (115078958..115126314)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (116393760..116441126)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (114719012..114766368)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene forkhead box P2 Neighboring gene VISTA enhancer hs222 Neighboring gene VISTA enhancer hs956 Neighboring gene VISTA enhancer hs966 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:114373209-114373709 Neighboring gene microRNA 3666 Neighboring gene VISTA enhancer hs1192 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:114465341-114466180 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18547 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26523 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18551 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18550 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18549 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18548 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:114570117-114570666 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18552 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26524 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:114670265-114670880 Neighboring gene MyoD family inhibitor domain containing Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26525 Neighboring gene long intergenic non-protein coding RNA 1392 Neighboring gene NANOG hESC enhancer GRCh37_chr7:114856613-114857169 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:114865885-114866454 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:114866455-114867023 Neighboring gene Rac family small GTPase 1 pseudogene 6 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:114939537-114940261 Neighboring gene POLR2D pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120521.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC002466, AC068610
      Related
      ENST00000435981.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      115078958..115126314
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      116393760..116441126
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)