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    TMX4-AS1 TMX4 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 105372520, updated on 10-Dec-2024

    Summary

    Official Symbol
    TMX4-AS1provided by HGNC
    Official Full Name
    TMX4 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:55788
    See related
    AllianceGenome:HGNC:55788
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 3.3) See more
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    Genomic context

    See TMX4-AS1 in Genome Data Viewer
    Location:
    20p12.3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (8019906..8028629)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (8061706..8070429)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (8000553..8009276)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17535 Neighboring gene NANOG hESC enhancer GRCh37_chr20:7936767-7937438 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:7964803-7965420 Neighboring gene hydroxyacid oxidase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12666 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12667 Neighboring gene Sharpr-MPRA regulatory region 13354 Neighboring gene thioredoxin related transmembrane protein 4 Neighboring gene Sharpr-MPRA regulatory region 6433 Neighboring gene 20p12 distal LINE-mediated recombination region Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12668 Neighboring gene HNF1, HNF4 and FOXA motif-containing MPRA enhancers 45, 51 and 106/107 Neighboring gene phosphorylase kinase regulatory subunit beta pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17536 Neighboring gene phospholipase C beta 1 Neighboring gene PLCB1 intronic transcript 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_184034.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL021396

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      8019906..8028629
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      8061706..8070429
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)