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    LINC02731 long intergenic non-protein coding RNA 2731 [ Homo sapiens (human) ]

    Gene ID: 100128239, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC02731provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2731provided by HGNC
    Primary source
    HGNC:HGNC:54248
    See related
    Ensembl:ENSG00000204241 AllianceGenome:HGNC:54248
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in brain (RPKM 1.7), testis (RPKM 0.8) and 17 other tissues See more
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    Genomic context

    See LINC02731 in Genome Data Viewer
    Location:
    11q25
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (134032272..134041341)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (134075056..134084125)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (133902167..133911236)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene microRNA 4697 Neighboring gene immunoglobulin superfamily member 9B Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4088 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:133800389-133801061 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:133804210-133804968 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:133804969-133805727 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:133809401-133810123 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:133810124-133810845 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:133814904-133815632 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:133816362-133817090 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5767 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:133821059-133821802 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:133821803-133822546 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4089 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:133863530-133864030 Neighboring gene long intergenic non-protein coding RNA 2730 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:133890717-133891220 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:133894031-133894833 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:133896267-133896838 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:133896839-133897409 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:133901031-133901530 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:133902231-133902958 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:133902959-133903686 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:133906753-133907724 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:133915510-133916010 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:133916360-133917559 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:133923324-133924176 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4092 Neighboring gene uncharacterized LOC124902797 Neighboring gene junctional adhesion molecule 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:133994434-133994972 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:133994973-133995509 Neighboring gene PTP4A2 pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027276.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AK125302
      Related
      ENST00000533922.7

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      134032272..134041341
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      134075056..134084125
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)