U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC00877 long intergenic non-protein coding RNA 877 [ Homo sapiens (human) ]

    Gene ID: 285286, updated on 10-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LINC00877provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 877provided by HGNC
    Primary source
    HGNC:HGNC:27706
    See related
    Ensembl:ENSG00000241163 AllianceGenome:HGNC:27706
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in lymph node (RPKM 1.5), appendix (RPKM 1.5) and 15 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LINC00877 in Genome Data Viewer
    Location:
    3p13
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (72035519..72100455, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (72074697..72140430, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (72084670..72149606, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377157 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:72054171-72054383 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:72067180-72068379 Neighboring gene UBE2Q2 pseudogene 9 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:72073913-72074414 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:72074415-72074914 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:72096703-72097203 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20067 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20069 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20068 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14525 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20070 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:72136311-72137027 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:72137028-72137745 Neighboring gene CCDC137 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20071 Neighboring gene CCDC137 pseudogene 1 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:72148884-72149724 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:72184639-72185213 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20072 Neighboring gene long intergenic non-protein coding RNA 870 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20073 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20074 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20075 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20076 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20077 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:72226281-72226881 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14526 Neighboring gene Sharpr-MPRA regulatory region 12200 Neighboring gene NANOG hESC enhancer GRCh37_chr3:72242807-72243499 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:72245432-72246000 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:72252370-72252906 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:72252907-72253442 Neighboring gene uncharacterized LOC124909393

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis. Greliche N, et al. BMC Med Genet, 2013 Mar 20. PMID 23509962, Free PMC Article
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.
    EBI GWAS Catalog

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

    Go to the top of the page Help

    Markers

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104116.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC105265, AK097190, DA590669
      Related
      ENST00000468646.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      72035519..72100455 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      72074697..72140430 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.