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    geko geko [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 50263, updated on 9-Dec-2024

    Summary

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    Official Symbol
    gekoprovided by FlyBase
    Official Full Name
    gekoprovided by FlyBase
    Primary source
    FLYBASE:FBgn0020300
    Locus tag
    Dmel_CG13695
    See related
    AllianceGenome:FB:FBgn0020300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BcDNA:RE30284; CG13695; CG13696; CT33153; Dmel\CG13695; Geko; gk
    Summary
    Involved in behavioral response to ethanol and sensory perception of smell. Is expressed in several structures, including adult tracheal system; amnioserosa anlage; epithelium; gut section; and organism subdivision. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See geko in Genome Data Viewer
    Location:
    75B11-75B12; 3-45 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (18139402..18145418)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (18132502..18138518)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Cytochrome P450 312a1 Neighboring gene long non-coding RNA:CR44669 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Geko, a novel gene involved in olfaction in Drosophila melanogaster. Shiraiwa T, et al. J Neurogenet, 2000 Sep. PMID 10992166
    2. The role of lineage-specific gene family expansion in the evolution of eukaryotes. Lespinet O, et al. Genome Res, 2002 Jul. PMID 12097341, Free PMC Article
    3. Genome-wide transcription analysis of clinal genetic variation in Drosophila. Chen Y, et al. PLoS One, 2012. PMID 22514645, Free PMC Article
    4. Sequencing mRNA from cryo-sliced Drosophila embryos to determine genome-wide spatial patterns of gene expression. Combs PA, et al. PLoS One, 2013. PMID 23951250, Free PMC Article
    5. Phenotypic plasticity and genotype by environment interaction for olfactory behavior in Drosophila melanogaster. Sambandan D, et al. Genetics, 2008 Jun. PMID 18505870, Free PMC Article

    See all (36) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in behavioral response to ethanol IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in sensory perception of smell IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    geko
    Names
    CG13695-PB
    geko-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      18139402..18145418
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_080241.3 → NP_524980.1  geko [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_524980.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9GNN9, Q9VVN7
      Related
      FBpp0074892
      Conserved Domains (1) summary
      cl11657
      Location:116 → 193
      DM4_12; DM4/DM12 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VVN7 Q9VVN7

    Gene LinkOut

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