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    T04A11.2 Phenazine biosynthesis-like domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 188043, updated on 9-Dec-2024

    Summary

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    Official Symbol
    T04A11.2
    Official Full Name
    Phenazine biosynthesis-like domain-containing protein
    Primary source
    WormBase:WBGene00011417
    Locus tag
    CELE_T04A11.2
    See related
    AllianceGenome:WB:WBGene00011417
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable isomerase activity. Predicted to be involved in biosynthetic process. Predicted to be active in cytoplasm. Orthologous to human PBLD (phenazine biosynthesis like protein domain containing). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See T04A11.2 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    5
    Sequence:
    Chromosome: IV; NC_003282.8 (12477373..12479000, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Ig-like and fibronectin type-III domain-containing protein 2 Neighboring gene ncRNA Neighboring gene Phenazine biosynthesis-like domain-containing protein Neighboring gene Ig-like and fibronectin type-III domain-containing protein 1 Neighboring gene Phenazine biosynthesis-like domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables isomerase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Phenazine biosynthesis-like domain-containing protein
    NP_502386.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      12477373..12479000 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_069985.3 → NP_502386.1  Phenazine biosynthesis-like domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_502386.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5ECB5
      Conserved Domains (2) summary
      pfam02567
      Location:10 → 311
      PhzC-PhzF; Phenazine biosynthesis-like protein
      cl19724
      Location:3 → 265
      DAP_epimerase; Diaminopimelate epimerase
    Nucleotide Protein
    Heading Accession and Version

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