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    Zfp629 zinc finger protein 629 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 308998, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Zfp629provided by RGD
    Official Full Name
    zinc finger protein 629provided by RGD
    Primary source
    RGD:1306257
    See related
    EnsemblRapid:ENSRNOG00000018877 AllianceGenome:RGD:1306257
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Znf629
    Summary
    Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in nucleus. Orthologous to human ZNF629 (zinc finger protein 629). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 71.1), Adrenal (RPKM 67.6) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zfp629 in Genome Data Viewer
    Location:
    1q37
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (191648753..191689082, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (182217499..182258585, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (199052430..199065639, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene phosphorylase kinase catalytic subunit gamma 2 Neighboring gene cilia and flagella associated protein 119 Neighboring gene ring finger protein 40 Neighboring gene 5S ribosomal RNA Neighboring gene BAF chromatin remodeling complex subunit BCL7C Neighboring gene microRNA 762 Neighboring gene cardiotrophin 1 Neighboring gene cardiotrophin 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 629

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107551.2 → NP_001101021.2  zinc finger protein 629

      See identical proteins and their annotated locations for NP_001101021.2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6AQ11, A6I9S9, D3ZJW5
      Related
      ENSRNOP00000041969.3, ENSRNOT00000044511.7
      Conserved Domains (4) summary
      COG5048
      Location:202 → 510
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:178 → 198
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:148 → 170
      zf-C2H2; Zinc finger, C2H2 type
      NF033913
      Location:26 → 147
      fibronec_FbpA; LPXTG-anchored fibronectin-binding protein FbpA

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      191648753..191689082 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039078379.2 → XP_038934307.1  zinc finger protein 629 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AQ11, A6I9S9, D3ZJW5
      Conserved Domains (4) summary
      COG5048
      Location:202 → 510
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:178 → 198
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:148 → 170
      zf-C2H2; Zinc finger, C2H2 type
      NF033913
      Location:26 → 147
      fibronec_FbpA; LPXTG-anchored fibronectin-binding protein FbpA

    2. XM_039078370.2 → XP_038934298.1  zinc finger protein 629 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AQ11, A6I9S9, D3ZJW5
      Conserved Domains (4) summary
      COG5048
      Location:202 → 510
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:178 → 198
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:148 → 170
      zf-C2H2; Zinc finger, C2H2 type
      NF033913
      Location:26 → 147
      fibronec_FbpA; LPXTG-anchored fibronectin-binding protein FbpA

    3. XM_006230272.5 → XP_006230334.1  zinc finger protein 629 isoform X1

      See identical proteins and their annotated locations for XP_006230334.1

      UniProtKB/TrEMBL
      A0A8I6AQ11, A6I9S9, D3ZJW5
      Conserved Domains (4) summary
      COG5048
      Location:202 → 510
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:178 → 198
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:148 → 170
      zf-C2H2; Zinc finger, C2H2 type
      NF033913
      Location:26 → 147
      fibronec_FbpA; LPXTG-anchored fibronectin-binding protein FbpA

    RNA

    1. XR_010052963.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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