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    4933431G14Rik RIKEN cDNA 4933431G14 gene [ Mus musculus (house mouse) ]

    Gene ID: 71265, updated on 22-Oct-2024

    Summary

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    Official Symbol
    4933431G14Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4933431G14 geneprovided by MGI
    Primary source
    MGI:MGI:1918515
    See related
    Ensembl:ENSMUSG00000108709 AllianceGenome:MGI:1918515
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930565C19Rik
    Expression
    Biased expression in testis adult (RPKM 13.1) and cerebellum adult (RPKM 0.5) See more
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    Genomic context

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    See 4933431G14Rik in Genome Data Viewer
    Location:
    6; 6 C1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (72097197..72100181, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (72120213..72123197, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 9130221F21 gene Neighboring gene STARR-seq mESC enhancer starr_16277 Neighboring gene spermine synthase pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E9667 Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 5 Neighboring gene STARR-seq mESC enhancer starr_16279 Neighboring gene STARR-seq mESC enhancer starr_16280 Neighboring gene VISTA enhancer mm123 Neighboring gene atonal bHLH transcription factor 8 Neighboring gene predicted gene, 52906 Neighboring gene predicted gene, 30782

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045163.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks two internal segments, compared to variant 1. The 5' end of this variant is not determined.
      Source sequence(s)
      AK016225, AK017004
      Related
      ENSMUST00000206696.3

    2. NR_045165.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AK016225, AK017004
      Related
      ENSMUST00000205571.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      72097197..72100181 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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